Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00442 ATGAGTCTTGTCGTTCACAAAGATACATTTAACAAGCAGATGGATTCGAGCAAGTATGTGAGATATACACCTGAACAGGTTGAAGCTTTAGAGAGGGTTTACTCTGACTGTCCAAAGCCTAGCTCTTTAAGGAGGCAACAGCTCATTAGGGAGTGTCCTATTCTCTCTAATATTGAGCCTAAACAGATCAAAGTCTGGTTCCAGAACCGCAGATGCCGTGAGAAGCAGAGAAAAGAATCTGCTCGCCTACAAACTGTGAATAGAAAATTGAATGCGATGAACAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAACAAGTGTCTCAGCTGGTTTATGATAATGGGTATATGCGTCAGCAGCTGCATAGTGCGGCTGGAGCGACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAGCACCAACAACAGCAAAACCCAACTTCTCAGCATCCTGAAAGGGATGCCACGAACCCAGCTGGTCTTCTTGCAATTGCTGAGGAGACCTTGGCAGAGTTTCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAAATGATTGGGATGAAGCCTGGTCCGGATTCGATTGGAATTGTTGCTGTTTCTCGCAACTGCTGCGGAGTAGCAGCACGAGCTTGTGGTCTCCTTAGTCTCGAGCCCACCAAAATTGCTGAAATCTTGAAAGACCGACCTTCGTGGTTTCGGGACTGCCGTCGTGTTGATATATTAAGCGTAATACCTGCTGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACATATGCTCCGACGACATTGGCTGCAGCACGGGATTTCTGGACTCTACGATACACTACTACTCTAGACGATGGAAGCCTTGTGGTATGTGAGAGATCGTTGACTGCCTCGACTGGTGGTCCCACGGGGCCTCCTACTTCGTGTTTTGCAAGAACTGAAATGCTTCCTAGTGGATGTTTAATCCGTGCTTGCGAGGGTGGAGGGTCCATTATTCACATTGTTGATCATATCAATTTCGACGCCCGGAGCGTCCCTGAAGTCCTGAGACCTCTGTATGAATCATCTAAGATTCTTGCTCAGAAAATGACAATTGCTGCTGTACGGCATGTTAGACAAATTGCTCAAGAGTCTAATGGAGAAATTCAAATCGGCAGTGGCCGCCAACCTGCTGTTTTAAGGACATTTAGTCAGAAACTGTGCCGGGGATTCAATGATGCTGTTAATGGATTTATTGACGATGGCTGGTCCCTCATGGGCAGCGATGGAGTGGAGGATGTGACTATTATGATAAACTCGTCGCCAAATAAAATTTTCAACTCCCAATTCGGTGGCATGTCCATGTGTCCAAGTTTTGGCGGCGGTGTGTTATGTGCCAAGGCGTCTATGCTGTTGCAGGATGTTCCCCCTGCTTTGCTTGTCCGATTCTTGAGGGAGCATCGTTCTGAGTGGACCGATTATGGGGTTGATGCCTACTCGGCCGCGTGTCTTAAATCCAGCCCTTACTCGGTCCCCTGCCCCGGGCCTAGTAGCTTCCCTAGTGGCCAAGTTATTCTTCCTCTTGCTCAAACTGTGGAACATGAAGAGTTCTTGGAGGTGGTTCGGCTCGAGGGCCATGCGTTCTCTCCTGATGATGTAGTTTTGGCCGGACGGGATATGTACTTATTGCAGGTAGTTTGCTTTTTTATAAAAGTTAATTCTCTTGATTTTACTCTTACTAATTGTACAATACACTGGCAGCTATGTAGTGGGGTTGATGAGAGTGCTGTTGGCTCCTGTGCCCAGCTTGTTTTTGCACCGATTGACGAATCATTTGCAGATGATGCTCCCCTGCTGCCTTCTGGTTTTCGGGACGGGCCTGGAATGACCGCTCGAACTTTGGATTTGGCTTCTACCCTTGAAGTTGGGGCCGGTAGTGCTCGACTGGGCAGTGAAGCGGATTTGAACAGCTATAACCTTCGATCCGTATTAACAATCGCATTCCAATTTACTTTTGAGAATCACACGAGAGAAAATGTGGCTGCAATGGCTCGTCAGTATGTTCGGAGTGTGGTTGGCTCCGTGCAAAGGGTTGCTATGGCGATTGCCCCTTCGCGTATGAGCTCCCTCCTGGGCCCTAAACCCCTTGCTGCTTCTCCTGAAGCCGTTACTTTGGCCCGATGGATTTGCCGCAGTTACAGGATTCATATAGGGAGAGATCTCCTTCAAGCCGAATCGCAATCCGGTGATGTTATTTTGAGGCAACTGTGGCACCATTCTGATGCAATTATGTGCTGCTCGGTGGTGAAAACTAACGCATCTCCCATCTTCACCTTTGCCAACCAGGCAGGTCTCGACATGCTCGAAACTACTCTCGTGGCCCTCCAAGATATAATGCTCGACAAGATTCTCGGCGACGGAGGCAGAAAAATTCTCTGCTCCGAATTCTCCAAGATTATGCAGCAGGGATTTGCTCATCTGCCTGCCAGAATTTGCACATCTAGCATGGGCAGACCCGTAACATACGAGCAGGCCGTCACTTGGAAAGTCCTCGACGACGACGACTCGAATCACTGCCTGGCGATTATGTTCATTAACTGGTCTTTTGTATGA 2598 48.27 MSLVVHKDTFNKQMDSSKYVRYTPEQVEALERVYSDCPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESARLQTVNRKLNAMNKLLMEENDRLQKQVSQLVYDNGYMRQQLHSAAGATTDNSCESVVMSGQHQQQQNPTSQHPERDATNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCCGVAARACGLLSLEPTKIAEILKDRPSWFRDCRRVDILSVIPAGNGGTIELIYMQTYAPTTLAAARDFWTLRYTTTLDDGSLVVCERSLTASTGGPTGPPTSCFARTEMLPSGCLIRACEGGGSIIHIVDHINFDARSVPEVLRPLYESSKILAQKMTIAAVRHVRQIAQESNGEIQIGSGRQPAVLRTFSQKLCRGFNDAVNGFIDDGWSLMGSDGVEDVTIMINSSPNKIFNSQFGGMSMCPSFGGGVLCAKASMLLQDVPPALLVRFLREHRSEWTDYGVDAYSAACLKSSPYSVPCPGPSSFPSGQVILPLAQTVEHEEFLEVVRLEGHAFSPDDVVLAGRDMYLLQVVCFFIKVNSLDFTLTNCTIHWQLCSGVDESAVGSCAQLVFAPIDESFADDAPLLPSGFRDGPGMTARTLDLASTLEVGAGSARLGSEADLNSYNLRSVLTIAFQFTFENHTRENVAAMARQYVRSVVGSVQRVAMAIAPSRMSSLLGPKPLAASPEAVTLARWICRSYRIHIGRDLLQAESQSGDVILRQLWHHSDAIMCCSVVKTNASPIFTFANQAGLDMLETTLVALQDIMLDKILGDGGRKILCSEFSKIMQQGFAHLPARICTSSMGRPVTYEQAVTWKVLDDDDSNHCLAIMFINWSFV 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4998763 5004035 - Bma005914.1 Bma11g00442 90844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00442 865 CDD homeodomain 18 78 IPR001356 GO:0003677
Bma11g00442 865 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Bma11g00442 865 Coils Coil 83 107 - -
Bma11g00442 865 Gene3D - 203 382 IPR023393 -
Bma11g00442 865 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Bma11g00442 865 SMART START_1 166 376 IPR002913 GO:0008289
Bma11g00442 865 MobiDBLite consensus disorder prediction 134 157 - -
Bma11g00442 865 CDD bZIP 70 109 - -
Bma11g00442 865 SUPERFAMILY Bet v1-like 167 378 - -
Bma11g00442 865 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 560 - -
Bma11g00442 865 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 576 865 - -
Bma11g00442 865 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 560 IPR044830 GO:0003700
Bma11g00442 865 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 576 865 IPR044830 GO:0003700
Bma11g00442 865 Gene3D - 11 84 - -
Bma11g00442 865 SMART HOX_1 15 81 IPR001356 GO:0003677
Bma11g00442 865 Pfam MEKHLA domain 719 864 IPR013978 -
Bma11g00442 865 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Bma11g00442 865 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Bma11g00442 865 Pfam START domain 167 375 IPR002913 GO:0008289
Bma11g00442 865 MobiDBLite consensus disorder prediction 134 158 - -
Bma11g00442 865 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00411 Bma-Chr4:3332220 Bma11g00442 Bma-Chr11:4998763 0 dispersed
Bma07g00448 Bma-Chr7:5441162 Bma11g00442 Bma-Chr11:4998763 0 dispersed
Bma07g01495 Bma-Chr7:50585249 Bma11g00442 Bma-Chr11:4998763 0 dispersed
Bma11g00442 Bma-Chr11:4998763 Bma14g00456 Bma-Chr14:5244387 0 dispersed
Bma11g00442 Bma-Chr11:4998763 Bma11g00466 Bma-Chr11:5606805 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58042 PF01852 START 7.00E-46 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00442 K09338 - qsu:112031480 1412.13