Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00443 ATGACTTCTATCTGTGGTCAATCTGATAATAGTGAAGCTGATGACCAGCAAAAACACTCTGAATCTGAGAACCGGCCTTCATCTCCTCTGACTGGACTGTCTCATCATGGCATTTCAAATCCAACTCAGTATACGGTGCCGTCACAACTTGGAGCGGGACATGCAATGGCACCACCGGCTTATCCATATCCTGATCCTTATTACAGAAGCATCTTTGCTCCGTATGATGGACAGCCATATCCTCCTCAGCCTTATGGTGTTCAACCTATGGTTCATCTCCAGTTAATGGGAATTCAGCAAGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTAAATGCCAAACAGTATCACGGCATCATGAGGAGACGTCAATCTCGGGCAAAAGCTGAATCAGAGAATAAAGCATTGAAGTCTAGGAAGCCGTATTTGCACGAATCTCGTCATTTACACGCATTGAGAAGAGCTAGAGGATGTGGTGGTAGGTTTCTCAAGGCAAAGAAAAATGAAAACCAATCAAATGAGGCGATGTCAGGTGATGAATTACAAACCAACTTGAACCTCAACAACAATAAAAATGATCCTGCTTCCTCGGATAGTGCATCCTAA 621 44.61 MTSICGQSDNSEADDQQKHSESENRPSSPLTGLSHHGISNPTQYTVPSQLGAGHAMAPPAYPYPDPYYRSIFAPYDGQPYPPQPYGVQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKAKKNENQSNEAMSGDELQTNLNLNNNKNDPASSDSAS 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5011590 5014569 - Bma005915.1 Bma11g00443 90845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00443 206 MobiDBLite consensus disorder prediction 1 51 - -
Bma11g00443 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 191 - -
Bma11g00443 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 191 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 MobiDBLite consensus disorder prediction 174 206 - -
Bma11g00443 206 Gene3D - 110 171 - -
Bma11g00443 206 MobiDBLite consensus disorder prediction 167 206 - -
Bma11g00443 206 MobiDBLite consensus disorder prediction 23 49 - -
Bma11g00443 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Bma11g00443 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00447 Bma-Chr7:5437087 Bma11g00443 Bma-Chr11:5011590 1.16E-111 dispersed
Bma11g00443 Bma-Chr11:5011590 Bma14g00770 Bma-Chr14:8563570 4.85E-33 dispersed
Bma11g00443 Bma-Chr11:5011590 Bma11g00292 Bma-Chr11:2745528 1.57E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58043 PF02045 CBFB_NFYA 3.30E-26 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00443 K08064 - jre:109011209 292.352