Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00443 | ATGACTTCTATCTGTGGTCAATCTGATAATAGTGAAGCTGATGACCAGCAAAAACACTCTGAATCTGAGAACCGGCCTTCATCTCCTCTGACTGGACTGTCTCATCATGGCATTTCAAATCCAACTCAGTATACGGTGCCGTCACAACTTGGAGCGGGACATGCAATGGCACCACCGGCTTATCCATATCCTGATCCTTATTACAGAAGCATCTTTGCTCCGTATGATGGACAGCCATATCCTCCTCAGCCTTATGGTGTTCAACCTATGGTTCATCTCCAGTTAATGGGAATTCAGCAAGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTAAATGCCAAACAGTATCACGGCATCATGAGGAGACGTCAATCTCGGGCAAAAGCTGAATCAGAGAATAAAGCATTGAAGTCTAGGAAGCCGTATTTGCACGAATCTCGTCATTTACACGCATTGAGAAGAGCTAGAGGATGTGGTGGTAGGTTTCTCAAGGCAAAGAAAAATGAAAACCAATCAAATGAGGCGATGTCAGGTGATGAATTACAAACCAACTTGAACCTCAACAACAATAAAAATGATCCTGCTTCCTCGGATAGTGCATCCTAA | 621 | 44.61 | MTSICGQSDNSEADDQQKHSESENRPSSPLTGLSHHGISNPTQYTVPSQLGAGHAMAPPAYPYPDPYYRSIFAPYDGQPYPPQPYGVQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKAKKNENQSNEAMSGDELQTNLNLNNNKNDPASSDSAS | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5011590 | 5014569 | - | Bma005915.1 | Bma11g00443 | 90845 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00443 | 206 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Bma11g00443 | 206 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 2 | 191 | - | - | |
Bma11g00443 | 206 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 2 | 191 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00443 | 206 | MobiDBLite | consensus disorder prediction | 174 | 206 | - | - | |
Bma11g00443 | 206 | Gene3D | - | 110 | 171 | - | - | |
Bma11g00443 | 206 | MobiDBLite | consensus disorder prediction | 167 | 206 | - | - | |
Bma11g00443 | 206 | MobiDBLite | consensus disorder prediction | 23 | 49 | - | - | |
Bma11g00443 | 206 | PRINTS | CCAAT-binding transcription factor subunit B signature | 144 | 167 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00443 | 206 | PRINTS | CCAAT-binding transcription factor subunit B signature | 113 | 135 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00443 | 206 | SMART | cbf3 | 109 | 170 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00443 | 206 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 115 | 135 | IPR018362 | GO:0003677|GO:0016602 | |
Bma11g00443 | 206 | ProSiteProfiles | NF-YA/HAP2 family profile. | 110 | 170 | IPR001289 | GO:0003700|GO:0006355 | |
Bma11g00443 | 206 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 112 | 167 | IPR001289 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00447 | Bma-Chr7:5437087 | Bma11g00443 | Bma-Chr11:5011590 | 1.16E-111 | dispersed | |
Bma11g00443 | Bma-Chr11:5011590 | Bma14g00770 | Bma-Chr14:8563570 | 4.85E-33 | dispersed | |
Bma11g00443 | Bma-Chr11:5011590 | Bma11g00292 | Bma-Chr11:2745528 | 1.57E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58043 | PF02045 | CBFB_NFYA | 3.30E-26 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00443 | K08064 | - | jre:109011209 | 292.352 |