Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00443 ATGACTTCTATCTGTGGTCAATCTGATAATAGTGAAGCTGATGACCAGCAAAAACACTCTGAATCTGAGAACCGGCCTTCATCTCCTCTGACTGGACTGTCTCATCATGGCATTTCAAATCCAACTCAGTATACGGTGCCGTCACAACTTGGAGCGGGACATGCAATGGCACCACCGGCTTATCCATATCCTGATCCTTATTACAGAAGCATCTTTGCTCCGTATGATGGACAGCCATATCCTCCTCAGCCTTATGGTGTTCAACCTATGGTTCATCTCCAGTTAATGGGAATTCAGCAAGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTAAATGCCAAACAGTATCACGGCATCATGAGGAGACGTCAATCTCGGGCAAAAGCTGAATCAGAGAATAAAGCATTGAAGTCTAGGAAGCCGTATTTGCACGAATCTCGTCATTTACACGCATTGAGAAGAGCTAGAGGATGTGGTGGTAGGTTTCTCAAGGCAAAGAAAAATGAAAACCAATCAAATGAGGCGATGTCAGGTGATGAATTACAAACCAACTTGAACCTCAACAACAATAAAAATGATCCTGCTTCCTCGGATAGTGCATCCTAA 621 44.61 MTSICGQSDNSEADDQQKHSESENRPSSPLTGLSHHGISNPTQYTVPSQLGAGHAMAPPAYPYPDPYYRSIFAPYDGQPYPPQPYGVQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKAKKNENQSNEAMSGDELQTNLNLNNNKNDPASSDSAS 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5011590 5014569 - Bma005915.1 Bma11g00443 90845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00443 206 MobiDBLite consensus disorder prediction 1 51 - -
Bma11g00443 206 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 191 - -
Bma11g00443 206 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 191 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 MobiDBLite consensus disorder prediction 174 206 - -
Bma11g00443 206 Gene3D - 110 171 - -
Bma11g00443 206 MobiDBLite consensus disorder prediction 167 206 - -
Bma11g00443 206 MobiDBLite consensus disorder prediction 23 49 - -
Bma11g00443 206 PRINTS CCAAT-binding transcription factor subunit B signature 144 167 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 PRINTS CCAAT-binding transcription factor subunit B signature 113 135 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 SMART cbf3 109 170 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 ProSitePatterns NF-YA/HAP2 subunit signature. 115 135 IPR018362 GO:0003677|GO:0016602
Bma11g00443 206 ProSiteProfiles NF-YA/HAP2 family profile. 110 170 IPR001289 GO:0003700|GO:0006355
Bma11g00443 206 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 112 167 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00443 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - jre:109011209 292.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00447 Bma-Chr7:5437087 Bma11g00443 Bma-Chr11:5011590 1.16E-111 dispersed
Bma11g00443 Bma-Chr11:5011590 Bma14g00770 Bma-Chr14:8563570 4.85E-33 dispersed
Bma11g00443 Bma-Chr11:5011590 Bma11g00292 Bma-Chr11:2745528 1.57E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma11g00292 BCT,CCT,ECH 77 248 CCAAT-HAP2 Transcription Factor Family AT3G20910 56.6 2.4e-45 179.5
Bma07g00265 BCT,CCT,ECH 120 247 CCAAT-HAP2 Transcription Factor Family AT3G20910 70.5 2.3e-43 172.9
Bma11g00443 . 61 172 CCAAT-HAP2 Transcription Factor Family AT2G34720 67.2 7.7e-38 153.7
Bma11g00443 . 8 174 CCAAT-HAP2 Transcription Factor Family AT1G30500 59.1 8.1e-47 183.7
Bma07g00447 . 10 171 CCAAT-HAP2 Transcription Factor Family AT1G30500 59.5 1.7e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58043 PF02045 CBFB_NFYA 3.30E-26 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma11g00443 Bma_Chr11 FPKM 21.863729 20.868757 21.432556 24.057154 32.23513 29.298182 28.196106 30.639944 31.946358 29.1497