Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00445 | ATGAGTAATCGCCCATTGGAACTTGGGAGGCCTTCCTCAGCTAAAAGAAGATTGAAAGATTTGTTGCTCCAGCAAGATAATCGCTTTTGTGCAGACTGTCGTGCTCCAGATCCCAAATGGGCGTCAGCCAATATTGGAGTTTTTGTGTGCTTAAAATGTTGTGGCGTTCACAGAAGCCTTGGTACCCATATATCAAAGGTACTATCTGTAACATTGGATGAATGGTCTAATGAGGAAATTGATTCCATGATTGAGGTGGGAGGAAATTCTTCTGCTAATTCAATATATGAAGCTTTTATTCCTGAAGGATATTCCAAGCCAAGACCAGATTCTAGCCATGAAGAACGATCGAAATACATTCGGTCTAAATATGAAAAGCAAGAATTTTTGAAACCTAGTTTGCGAATCTTATCAACCAACTCGGGAAGGAGTTCTCTACAAACAAGGCTTTCTAGAAAGATTATGAATAGTTTCCGCAGTAAAAGTTCTTCTCAGAAATTGTTGCAGGAAGGCATGGTTGAGTTTATTGGGTTACTGAAAGTCAAAGTGATTAAAGGCACAAATTTGGCCATTAGGGATATGATGTCAAGCGATCCTTATGTCGTCTTGAATCTTGGAAACCAGACTGCTCAGACTACCGTGAAAAAAAGCAACTTGAATCCCATCTGGAATGAGGAACTCATGCTGTCAGTGCCTCAGGATTTTGGACCACTCAAATTGCGGGTCTTCGACCACGATACATTTTCAGCAGACGATATCATGGGAGAAGCAGAGATCGACCTGCAGCCAATGATAACATCAGCGACGGCGTTTGGAGACGCAGGAATGTTTGGAAACATGCAGATTGGAAAATGGCTCAAGTCTCATGATAATGCTCTCATAGATGATAGCACTGTCAATATTGTAGACGGTAAGGTCAAACAAAATGTCTTTCTCAAGCTTCAGAACGTGGAATCAGGAGATTTAGATCTTGAGCTCGAATGGATGCCTCTTGATCAGTAG | 1002 | 41.42 | MSNRPLELGRPSSAKRRLKDLLLQQDNRFCADCRAPDPKWASANIGVFVCLKCCGVHRSLGTHISKVLSVTLDEWSNEEIDSMIEVGGNSSANSIYEAFIPEGYSKPRPDSSHEERSKYIRSKYEKQEFLKPSLRILSTNSGRSSLQTRLSRKIMNSFRSKSSSQKLLQEGMVEFIGLLKVKVIKGTNLAIRDMMSSDPYVVLNLGNQTAQTTVKKSNLNPIWNEELMLSVPQDFGPLKLRVFDHDTFSADDIMGEAEIDLQPMITSATAFGDAGMFGNMQIGKWLKSHDNALIDDSTVNIVDGKVKQNVFLKLQNVESGDLDLELEWMPLDQ | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5022554 | 5025929 | + | Bma005917.1 | Bma11g00445 | 90847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00445 | 333 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 15 | 132 | IPR037278 | - | |
Bma11g00445 | 333 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 177 | 322 | IPR035892 | - | |
Bma11g00445 | 333 | ProSiteProfiles | C2 domain profile. | 160 | 274 | IPR000008 | - | |
Bma11g00445 | 333 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 8 | 333 | IPR044518 | GO:0005096|GO:0005543 | |
Bma11g00445 | 333 | Gene3D | C2 domain | 175 | 333 | IPR035892 | - | |
Bma11g00445 | 333 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 | 8 | 333 | - | - | |
Bma11g00445 | 333 | SMART | arf_gap_3 | 16 | 137 | IPR001164 | GO:0005096 | |
Bma11g00445 | 333 | Pfam | C2 domain | 177 | 266 | IPR000008 | - | |
Bma11g00445 | 333 | CDD | C2_ArfGAP | 176 | 320 | - | - | |
Bma11g00445 | 333 | CDD | ArfGap | 18 | 124 | - | - | |
Bma11g00445 | 333 | PRINTS | HIV Rev interacting protein signature | 27 | 46 | IPR001164 | GO:0005096 | |
Bma11g00445 | 333 | PRINTS | HIV Rev interacting protein signature | 67 | 88 | IPR001164 | GO:0005096 | |
Bma11g00445 | 333 | PRINTS | HIV Rev interacting protein signature | 46 | 63 | IPR001164 | GO:0005096 | |
Bma11g00445 | 333 | Pfam | Putative GTPase activating protein for Arf | 16 | 131 | IPR001164 | GO:0005096 | |
Bma11g00445 | 333 | Gene3D | Arf GTPase activating protein | 6 | 135 | IPR038508 | - | |
Bma11g00445 | 333 | SMART | C2_3c | 178 | 273 | IPR000008 | - | |
Bma11g00445 | 333 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 129 | IPR001164 | GO:0005096 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma11g00445 | Bma-Chr11:5022554 | Bma03g00910 | Bma-Chr3:9076041 | 8.31E-38 | dispersed | |
Bma07g01337 | Bma-Chr7:48898152 | Bma11g00445 | Bma-Chr11:5022554 | 9.40E-27 | transposed | |
Bma14g00279 | Bma-Chr14:3500490 | Bma11g00445 | Bma-Chr11:5022554 | 3.58E-26 | transposed | |
Bma06g00437 | Bma-Chr6:16577021 | Bma11g00445 | Bma-Chr11:5022554 | 1.82E-42 | transposed | |
Bma11g00445 | Bma-Chr11:5022554 | Bma11g00465 | Bma-Chr11:5575051 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00445 | K12486 | - | zju:107404870 | 586.645 |