Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00445 ATGAGTAATCGCCCATTGGAACTTGGGAGGCCTTCCTCAGCTAAAAGAAGATTGAAAGATTTGTTGCTCCAGCAAGATAATCGCTTTTGTGCAGACTGTCGTGCTCCAGATCCCAAATGGGCGTCAGCCAATATTGGAGTTTTTGTGTGCTTAAAATGTTGTGGCGTTCACAGAAGCCTTGGTACCCATATATCAAAGGTACTATCTGTAACATTGGATGAATGGTCTAATGAGGAAATTGATTCCATGATTGAGGTGGGAGGAAATTCTTCTGCTAATTCAATATATGAAGCTTTTATTCCTGAAGGATATTCCAAGCCAAGACCAGATTCTAGCCATGAAGAACGATCGAAATACATTCGGTCTAAATATGAAAAGCAAGAATTTTTGAAACCTAGTTTGCGAATCTTATCAACCAACTCGGGAAGGAGTTCTCTACAAACAAGGCTTTCTAGAAAGATTATGAATAGTTTCCGCAGTAAAAGTTCTTCTCAGAAATTGTTGCAGGAAGGCATGGTTGAGTTTATTGGGTTACTGAAAGTCAAAGTGATTAAAGGCACAAATTTGGCCATTAGGGATATGATGTCAAGCGATCCTTATGTCGTCTTGAATCTTGGAAACCAGACTGCTCAGACTACCGTGAAAAAAAGCAACTTGAATCCCATCTGGAATGAGGAACTCATGCTGTCAGTGCCTCAGGATTTTGGACCACTCAAATTGCGGGTCTTCGACCACGATACATTTTCAGCAGACGATATCATGGGAGAAGCAGAGATCGACCTGCAGCCAATGATAACATCAGCGACGGCGTTTGGAGACGCAGGAATGTTTGGAAACATGCAGATTGGAAAATGGCTCAAGTCTCATGATAATGCTCTCATAGATGATAGCACTGTCAATATTGTAGACGGTAAGGTCAAACAAAATGTCTTTCTCAAGCTTCAGAACGTGGAATCAGGAGATTTAGATCTTGAGCTCGAATGGATGCCTCTTGATCAGTAG 1002 41.42 MSNRPLELGRPSSAKRRLKDLLLQQDNRFCADCRAPDPKWASANIGVFVCLKCCGVHRSLGTHISKVLSVTLDEWSNEEIDSMIEVGGNSSANSIYEAFIPEGYSKPRPDSSHEERSKYIRSKYEKQEFLKPSLRILSTNSGRSSLQTRLSRKIMNSFRSKSSSQKLLQEGMVEFIGLLKVKVIKGTNLAIRDMMSSDPYVVLNLGNQTAQTTVKKSNLNPIWNEELMLSVPQDFGPLKLRVFDHDTFSADDIMGEAEIDLQPMITSATAFGDAGMFGNMQIGKWLKSHDNALIDDSTVNIVDGKVKQNVFLKLQNVESGDLDLELEWMPLDQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5022554 5025929 + Bma005917.1 Bma11g00445 90847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00445 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Bma11g00445 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 322 IPR035892 -
Bma11g00445 333 ProSiteProfiles C2 domain profile. 160 274 IPR000008 -
Bma11g00445 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 333 IPR044518 GO:0005096|GO:0005543
Bma11g00445 333 Gene3D C2 domain 175 333 IPR035892 -
Bma11g00445 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 8 333 - -
Bma11g00445 333 SMART arf_gap_3 16 137 IPR001164 GO:0005096
Bma11g00445 333 Pfam C2 domain 177 266 IPR000008 -
Bma11g00445 333 CDD C2_ArfGAP 176 320 - -
Bma11g00445 333 CDD ArfGap 18 124 - -
Bma11g00445 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Bma11g00445 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Bma11g00445 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Bma11g00445 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Bma11g00445 333 Gene3D Arf GTPase activating protein 6 135 IPR038508 -
Bma11g00445 333 SMART C2_3c 178 273 IPR000008 -
Bma11g00445 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00445 Bma-Chr11:5022554 Bma03g00910 Bma-Chr3:9076041 8.31E-38 dispersed
Bma07g01337 Bma-Chr7:48898152 Bma11g00445 Bma-Chr11:5022554 9.40E-27 transposed
Bma14g00279 Bma-Chr14:3500490 Bma11g00445 Bma-Chr11:5022554 3.58E-26 transposed
Bma06g00437 Bma-Chr6:16577021 Bma11g00445 Bma-Chr11:5022554 1.82E-42 transposed
Bma11g00445 Bma-Chr11:5022554 Bma11g00465 Bma-Chr11:5575051 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00445 K12486 - zju:107404870 586.645