Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma11g00486 | ATGAGAGGGGAAGTGCAATTAGAGCCACCGAGTACGCAAATTGCAAGTGACTCTGATCCTCTACTTGAGAATCAGGAGGATTTATCGCCCGGGAGCTCAAGTGAGATTAAAGAGGATGACAATGAAGCTGGCTCCATTCCGTGTTGTCGCATCTGCCTTGAGAGCGATTCTGAACCAGATGATGACTTGATATCCCCATGCAAATGCAAAGGGACTCAGCAGTTTGTTCATCGCTCATGCCTTGATCACTGGCGTTCAGAAGGGTTTGCATTTTCGCATTGCACTACTTGCAAGGCCCAATTTCACCTACGAACTATTTCGTTTGAGGACAACTCATGGCGCAGAGTGAAGTTTAGACTTTTTGTGGCAAGGGATGTTCTCCTTGTTTTTCTTGCTGTACAAACTGTCATTGCTGCAATTGGAGGCTTTGCATATATTACGGACAGAGATGGGGCTTTTAGAAATTCTTTCAGTGATGGATGGGATCGCATTCTGTCTAAACATCCAATACCGTTCTATTATTGTATAGGAGTAATGGCCTTCTTTGTTATGCTTGGTTTTTTTGGGCTCATACTTCATTGCTCCTCCCTGAATAGCAATGATCCACGAGTAGCAGGGTGCCATAATTGCTGGTATGGGTGGGGAATCTTGGATTGTTTTCCCGCATCTATGGAAGCCTGCTTTGCACTTGTTATCGTTTTTGTTGTCATCTTTGCTATTCTTGGCATCGCATATGGTTTCCTCGCTGCAACTATGGCCATTCAGAGGATCTGGCAGAGACACTACCACATTCTCACCAAAAGGGAGCTAACTAAGGAGTACATAGTGGAGGATCTTCATGGTTGCTATACACCTCCAAAATTGGATCCAAGACACGAAGAACGTCTGAAAATGCTCAAGCTTTTATAA | 909 | 44.33 | MRGEVQLEPPSTQIASDSDPLLENQEDLSPGSSSEIKEDDNEAGSIPCCRICLESDSEPDDDLISPCKCKGTQQFVHRSCLDHWRSEGFAFSHCTTCKAQFHLRTISFEDNSWRRVKFRLFVARDVLLVFLAVQTVIAAIGGFAYITDRDGAFRNSFSDGWDRILSKHPIPFYYCIGVMAFFVMLGFFGLILHCSSLNSNDPRVAGCHNCWYGWGILDCFPASMEACFALVIVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGCYTPPKLDPRHEERLKMLKLL | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 6038818 | 6041029 | - | Bma005968.1 | Bma11g00486 | 90888 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma11g00486 | 302 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 302 | - | - | |
| Bma11g00486 | 302 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 41 | 104 | IPR011016 | GO:0008270 | |
| Bma11g00486 | 302 | Pfam | RING-variant domain | 49 | 97 | IPR011016 | GO:0008270 | |
| Bma11g00486 | 302 | CDD | RING_CH-C4HC3_MARCH | 49 | 98 | - | - | |
| Bma11g00486 | 302 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 302 | - | - | |
| Bma11g00486 | 302 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Bma11g00486 | 302 | SUPERFAMILY | RING/U-box | 47 | 102 | - | - | |
| Bma11g00486 | 302 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 110 | IPR013083 | - | |
| Bma11g00486 | 302 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - | |
| Bma11g00486 | 302 | SMART | ringv_2 | 48 | 98 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma09g00052 | Bma-Chr9:1196818 | Bma11g00486 | Bma-Chr11:6038818 | 1.12E-56 | dispersed | |
| Bma09g00054 | Bma-Chr9:1289536 | Bma11g00486 | Bma-Chr11:6038818 | 3.77E-55 | dispersed | |
| Bma10g00653 | Bma-Chr10:9398895 | Bma11g00486 | Bma-Chr11:6038818 | 8.18E-39 | dispersed | |
| Bma11g00486 | Bma-Chr11:6038818 | Bma13g00064 | Bma-Chr13:761605 | 1.64E-06 | dispersed | |
| Bma11g00486 | Bma-Chr11:6038818 | Bma10g00693 | Bma-Chr10:10463121 | 1.84E-37 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma11g00486 | - | - | zju:107432369 | 555.444 |