Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00506 ATGGCCGTCAAAGCTGCTCGCGAAGCCTTCGATCATGGGCCATGGCCCCGCCTCCCAGGCTTCGAAAGAGGAAAGATCATGATGAAATTTGCAGACTTGGTTGACCAACACGTGGAAGAGCTGGCTGCGTTAGACACCATTGATGCTGGTAAATTGTATGCGTCTGGAAAGGCAGCGGATATTCCGGAGGCGGCAAACACGCTGCGGTACTACGCAGGCGCAGCCGATAAGATTCACGGGGATGTGCTGAAAATGGGTGGCGACCTCCATGGTTACACTCTGCAAGAGCCCGTCGGCGTTGTCGGCCATGTCATCCCTTGGAATTTCCCCACCACAATGTTCTTCTGCAAGGTCAGCCCTGCCTTGGCCGCCGGCTGCACCATGATTGTTAAGCCCGCTGAGCAGAGCTCGCTTTCCGCTCTCTACTATGCTCATCTTTCTAAGCTGGCTGGTATTCCTGATGGAGTGCTGAATGTGGTAACTGGATTTGGAAAGACAGCTGGGGCAGCTCTGTGCTCTCATATGGACGTTGATAAAATAAGCTTCACTGGGTCGACGGAGGTCGGGCGACAAATAATGCACGCCGCCGCAAGCAGCAATTTGAAGTCGTTGTGCCTAGAATTAGGCGGCAAATCACCTCTCGTAATCTTTGACGACGCCGATTTAGACCAAGCGGCTCAGCTGGCACTCATCGGCATTCTCTTCAACAAGGGAGAGATTTGCGTGGCAAGTTCAAGAGTCTTTGTCCAAGAAGGAATTTATGATGAACTAGTGAAGAAACTAGTGGAAATGGCCAACAGTTGGGTGGTAGGAGATCCTTTCGATCCAAAAGTTCAACAAGGACCGCAGGTGGATAAGAAGCAGTTCGAGAAAATCCTTTCATATATAGAGAGTGGGAAGAGAGAAGGAGCCACTCTGCTAACTGGTGGCAAACCCATAGGCAACAAAGGCTATTTCATCGAGCCCACAATTTTCACCGATGTCAAGGAGCATATGGCCATATGTCAAGATGAAATATTTGGACCAGTCATGTCCCTTATGAAATTCAAGACGATGGAGGACGCGATAAAGAGTGCAAACAACACGAGATACGGGCTTGCAGCGGGCATCGTGACCAAGAACATAGACATAGCGAACACGGTGTCGAGGTCGATAAGAGCAGGGATTGTGTGGGTGAACTGCTACTTTGCTTTTGACAGAGGCTGTCCTTACGGAGGCTACAAAATGAGTGGGTTTGGCAGAGATTTTGGGATGGAAGCCATCAACAACTATCTCCAAATTAAATCCGTCGTCACTCCTTTGTATAACACCCCTTGGCTTTGA 1323 49.89 MAVKAAREAFDHGPWPRLPGFERGKIMMKFADLVDQHVEELAALDTIDAGKLYASGKAADIPEAANTLRYYAGAADKIHGDVLKMGGDLHGYTLQEPVGVVGHVIPWNFPTTMFFCKVSPALAAGCTMIVKPAEQSSLSALYYAHLSKLAGIPDGVLNVVTGFGKTAGAALCSHMDVDKISFTGSTEVGRQIMHAAASSNLKSLCLELGGKSPLVIFDDADLDQAAQLALIGILFNKGEICVASSRVFVQEGIYDELVKKLVEMANSWVVGDPFDPKVQQGPQVDKKQFEKILSYIESGKREGATLLTGGKPIGNKGYFIEPTIFTDVKEHMAICQDEIFGPVMSLMKFKTMEDAIKSANNTRYGLAAGIVTKNIDIANTVSRSIRAGIVWVNCYFAFDRGCPYGGYKMSGFGRDFGMEAINNYLQIKSVVTPLYNTPWL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6312388 6315066 - Bma005988.1 Bma11g00506 90908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00506 440 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 440 - -
Bma11g00506 440 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 2 428 IPR016162 GO:0016491
Bma11g00506 440 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 234 245 IPR016160 GO:0016491
Bma11g00506 440 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 1 440 - -
Bma11g00506 440 SUPERFAMILY ALDH-like 2 436 IPR016161 GO:0016491
Bma11g00506 440 Pfam Aldehyde dehydrogenase family 2 430 IPR015590 GO:0016491
Bma11g00506 440 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 206 213 IPR029510 GO:0016491
Bma11g00506 440 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 210 399 IPR016163 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00506 K12355 REF1; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] - jre:108992688 723.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01773 Bma-Chr1:60456044 Bma11g00506 Bma-Chr11:6312388 0 dispersed
Bma08g00185 Bma-Chr8:2251663 Bma11g00506 Bma-Chr11:6312388 3.82E-118 dispersed
Bma11g00506 Bma-Chr11:6312388 Bma12g01022 Bma-Chr12:42322685 1.27E-110 dispersed
Bma11g00506 Bma-Chr11:6312388 Bma07g00481 Bma-Chr7:5816668 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma07g00481 . 6 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.1 2.2e-216 748.4
Bma01g01773 . 8 505 Aldehyde Dehydrogenase Gene Family AT3G24503 70.2 2.6e-209 724.9
Bma06g01043 . 1 506 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 2.0e-201 698.7
Bma11g00506 . 1 440 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 2.0e-193 672.2
Bma01g00407 . 1 467 Aldehyde Dehydrogenase Gene Family AT3G24503 68.2 4.3e-188 654.4
Bma01g00054 . 36 540 Aldehyde Dehydrogenase Gene Family AT3G24503 54.2 5.1e-157 551.2
Bma01g00054 . 1 540 Aldehyde Dehydrogenase Gene Family AT3G48000 76.3 8.8e-248 852.8
Bma07g00481 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.0 1.2e-164 576.6
Bma01g01773 . 7 505 Aldehyde Dehydrogenase Gene Family AT3G48000 55.9 1.1e-162 570.1
Bma06g01043 . 17 506 Aldehyde Dehydrogenase Gene Family AT3G48000 54.5 5.3e-160 561.2
Bma01g00407 . 1 467 Aldehyde Dehydrogenase Gene Family AT3G48000 54.4 2.0e-151 532.7
Bma11g00506 . 2 440 Aldehyde Dehydrogenase Gene Family AT3G48000 56.7 1.4e-149 526.6
Bma01g00054 . 1 384 Aldehyde Dehydrogenase Gene Family AT1G23800 77.5 1.2e-172 602.8
Bma06g01043 . 17 350 Aldehyde Dehydrogenase Gene Family AT1G23800 55.1 3.2e-101 365.5
Bma07g00481 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 5.5e-101 364.8
Bma01g01773 . 1 349 Aldehyde Dehydrogenase Gene Family AT1G23800 51.9 5.2e-99 358.2
Bma01g00407 . 1 311 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 8.5e-94 340.9
Bma11g00506 . 2 284 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 7.7e-87 317.8
Bma04g00013 . 7 481 Aldehyde Dehydrogenase Gene Family AT4G34240 62.1 1.5e-175 612.8
Bma06g00492 . 49 403 Aldehyde Dehydrogenase Gene Family AT4G34240 65.4 1.6e-129 459.9
Bma04g00013 . 68 479 Aldehyde Dehydrogenase Gene Family AT1G44170 72.6 2.3e-179 625.2
Bma11g00290 BCT 67 481 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 5.7e-117 417.9
Bma07g00256 BCT 60 474 Aldehyde Dehydrogenase Gene Family AT1G44170 51.3 6.9e-115 411.0
Bma06g00107 . 77 482 Aldehyde Dehydrogenase Gene Family AT1G44170 50.7 1.2e-114 410.2
Bma06g00492 . 145 403 Aldehyde Dehydrogenase Gene Family AT1G44170 69.1 1.5e-101 366.7
Bma06g00107 . 1 484 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 7.8e-187 650.2
Bma11g00290 BCT 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 2.6e-158 555.4
Bma07g00256 BCT 1 476 Aldehyde Dehydrogenase Gene Family AT4G36250 53.7 4.3e-153 538.1
Bma05g00591 . 1 490 Aldehyde Dehydrogenase Gene Family AT1G79440 75.3 2.8e-222 768.1
Bma12g00574 . 1 477 Aldehyde Dehydrogenase Gene Family AT1G79440 77.2 4.5e-212 734.2
Bma12g00367 . 2 489 Aldehyde Dehydrogenase Gene Family AT1G79440 70.0 3.7e-198 688.0
Bma08g00029 . 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 81.9 8.5e-236 813.1
Bma09g00142 . 1 396 Aldehyde Dehydrogenase Gene Family AT2G14170 61.5 3.2e-142 502.3
Bma12g01022 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.5e-246 848.6
Bma08g00185 . 1 528 Aldehyde Dehydrogenase Gene Family AT1G74920 76.9 7.6e-246 846.3
Bma12g01022 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 78.7 5.7e-249 856.7
Bma08g00185 . 1 528 Aldehyde Dehydrogenase Gene Family AT3G48170 75.2 3.8e-245 844.0
Bma06g00962 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.3 2.0e-262 901.4
Bma04g01129 . 1 555 Aldehyde Dehydrogenase Gene Family AT3G66658 81.3 3.8e-276 947.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003336 2 1 7 5 4 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 0 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma11g00506 Bma_Chr11 FPKM 0.757233 0.377538 11.311255 10.648235 2.246914 2.784737 1.752303 2.381318 2.262397 2.806998