Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00534 ATGGAGAAGGTTCACCGTCTCAGCGAGCTATCAGCAATGGCGGACCAGCCAATTTGTGAGTCGGAGTCAAGCTGCACAAACCCTGCTTCATCTTCCTCGCCTTCACCATCCTCGCCGCCGGAAGAATCGACGGGTCAGTCGACGCAGAAACGGCAGAAACGATCAGCTTCTGATACCGACAGTAAGCATCCCGTTTTCCGTGGAGTCCGAAAGCGAGCTTGGGGAAAATGGGTGTCTGAAATCCGAGAACCCAGAAAGAAAAGTCGGATCTGGCTCGGTACTTTTGCCACGCCGGAAATGGCTGCTCGAGCTCACGACGTCGCCGCTTTAAGCATCAAAGGAAAGTCCGCCATACTCAACTTCCCAGAACACGCTGGAGCTCTTCCCCGCCCGGCTTCCAACTCTCCTAGAGATATTCAAGTCGCCGCTGCTAAAGCAGCTTCAATGGATTTTCCCGTTCCTTCACCACCATCCTCGTCGACGCCGCAGATCTCCCAGTCTTCTTCTTCCTCTTCCTCCTCCTCCTCGTCTTCATTGTCATCTATAGAAGAATCCACGCCGGAGGAGCTCAGTGAGATAGTACAGCTACCGAACCTCGGAACGAGCTACGACTCGCCGGACTCCGGCAACGAGTTGGTGTTCGCGGACTCAATGGAAGGTTGGCTCTATCCTTATCCATGGTATCAAAGCATAAATGGAGATGAAGTCTTCTGTTTATCAATGGCGGAAAATCCTACAGTTTTCGAAACTTCCTTGTGGCAACATTAA 768 52.21 MEKVHRLSELSAMADQPICESESSCTNPASSSSPSPSSPPEESTGQSTQKRQKRSASDTDSKHPVFRGVRKRAWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGKSAILNFPEHAGALPRPASNSPRDIQVAAAKAASMDFPVPSPPSSSTPQISQSSSSSSSSSSSSLSSIEESTPEELSEIVQLPNLGTSYDSPDSGNELVFADSMEGWLYPYPWYQSINGDEVFCLSMAENPTVFETSLWQH 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6799293 6800060 + Bma006021.1 Bma11g00534 90936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00534 255 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Bma11g00534 255 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Bma11g00534 255 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Bma11g00534 255 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Bma11g00534 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 236 - -
Bma11g00534 255 MobiDBLite consensus disorder prediction 1 69 - -
Bma11g00534 255 MobiDBLite consensus disorder prediction 160 191 - -
Bma11g00534 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 20 236 - -
Bma11g00534 255 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Bma11g00534 255 MobiDBLite consensus disorder prediction 149 191 - -
Bma11g00534 255 MobiDBLite consensus disorder prediction 17 52 - -
Bma11g00534 255 MobiDBLite consensus disorder prediction 53 69 - -
Bma11g00534 255 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
Bma11g00534 255 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Bma11g00534 255 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01217 Bma-Chr5:51580210 Bma11g00534 Bma-Chr11:6799293 1.49E-45 dispersed
Bma11g00534 Bma-Chr11:6799293 Bma13g00916 Bma-Chr13:39582644 7.69E-50 dispersed
Bma14g02069 Bma-Chr14:44058205 Bma11g00534 Bma-Chr11:6799293 2.85E-35 dispersed
Bma04g01183 Bma-Chr4:31636296 Bma11g00534 Bma-Chr11:6799293 1.48E-27 transposed
Bma06g00036 Bma-Chr6:646393 Bma11g00534 Bma-Chr11:6799293 1.19E-24 transposed
Bma07g01043 Bma-Chr7:41991004 Bma11g00534 Bma-Chr11:6799293 2.27E-68 transposed
Bma15g00586 Bma-Chr15:7347116 Bma11g00534 Bma-Chr11:6799293 4.82E-42 transposed
Bma01g00198 Bma-Chr1:1736158 Bma11g00534 Bma-Chr11:6799293 5.97E-64 wgd
Bma11g00534 Bma-Chr11:6799293 Bma06g00819 Bma-Chr6:41823166 6.08E-65 wgd
Bma11g00534 Bma-Chr11:6799293 Bma07g00513 Bma-Chr7:6393305 9.46E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58046 PF00847 AP2 4.50E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00534 K09286 - csv:101219745 235.343