Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00534 | ATGGAGAAGGTTCACCGTCTCAGCGAGCTATCAGCAATGGCGGACCAGCCAATTTGTGAGTCGGAGTCAAGCTGCACAAACCCTGCTTCATCTTCCTCGCCTTCACCATCCTCGCCGCCGGAAGAATCGACGGGTCAGTCGACGCAGAAACGGCAGAAACGATCAGCTTCTGATACCGACAGTAAGCATCCCGTTTTCCGTGGAGTCCGAAAGCGAGCTTGGGGAAAATGGGTGTCTGAAATCCGAGAACCCAGAAAGAAAAGTCGGATCTGGCTCGGTACTTTTGCCACGCCGGAAATGGCTGCTCGAGCTCACGACGTCGCCGCTTTAAGCATCAAAGGAAAGTCCGCCATACTCAACTTCCCAGAACACGCTGGAGCTCTTCCCCGCCCGGCTTCCAACTCTCCTAGAGATATTCAAGTCGCCGCTGCTAAAGCAGCTTCAATGGATTTTCCCGTTCCTTCACCACCATCCTCGTCGACGCCGCAGATCTCCCAGTCTTCTTCTTCCTCTTCCTCCTCCTCCTCGTCTTCATTGTCATCTATAGAAGAATCCACGCCGGAGGAGCTCAGTGAGATAGTACAGCTACCGAACCTCGGAACGAGCTACGACTCGCCGGACTCCGGCAACGAGTTGGTGTTCGCGGACTCAATGGAAGGTTGGCTCTATCCTTATCCATGGTATCAAAGCATAAATGGAGATGAAGTCTTCTGTTTATCAATGGCGGAAAATCCTACAGTTTTCGAAACTTCCTTGTGGCAACATTAA | 768 | 52.21 | MEKVHRLSELSAMADQPICESESSCTNPASSSSPSPSSPPEESTGQSTQKRQKRSASDTDSKHPVFRGVRKRAWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGKSAILNFPEHAGALPRPASNSPRDIQVAAAKAASMDFPVPSPPSSSTPQISQSSSSSSSSSSSSLSSIEESTPEELSEIVQLPNLGTSYDSPDSGNELVFADSMEGWLYPYPWYQSINGDEVFCLSMAENPTVFETSLWQH | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6799293 | 6800060 | + | Bma006021.1 | Bma11g00534 | 90936 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00534 | 255 | PRINTS | Ethylene responsive element binding protein signature | 88 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Bma11g00534 | 255 | PRINTS | Ethylene responsive element binding protein signature | 66 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Bma11g00534 | 255 | Pfam | AP2 domain | 64 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
Bma11g00534 | 255 | CDD | AP2 | 66 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Bma11g00534 | 255 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 20 | 236 | - | - | |
Bma11g00534 | 255 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
Bma11g00534 | 255 | MobiDBLite | consensus disorder prediction | 160 | 191 | - | - | |
Bma11g00534 | 255 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 20 | 236 | - | - | |
Bma11g00534 | 255 | ProSiteProfiles | AP2/ERF domain profile. | 65 | 122 | IPR001471 | GO:0003700|GO:0006355 | |
Bma11g00534 | 255 | MobiDBLite | consensus disorder prediction | 149 | 191 | - | - | |
Bma11g00534 | 255 | MobiDBLite | consensus disorder prediction | 17 | 52 | - | - | |
Bma11g00534 | 255 | MobiDBLite | consensus disorder prediction | 53 | 69 | - | - | |
Bma11g00534 | 255 | Gene3D | AP2/ERF domain | 65 | 124 | IPR036955 | GO:0003700|GO:0006355 | |
Bma11g00534 | 255 | SUPERFAMILY | DNA-binding domain | 65 | 123 | IPR016177 | GO:0003677 | |
Bma11g00534 | 255 | SMART | rav1_2 | 65 | 128 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g01217 | Bma-Chr5:51580210 | Bma11g00534 | Bma-Chr11:6799293 | 1.49E-45 | dispersed | |
Bma11g00534 | Bma-Chr11:6799293 | Bma13g00916 | Bma-Chr13:39582644 | 7.69E-50 | dispersed | |
Bma14g02069 | Bma-Chr14:44058205 | Bma11g00534 | Bma-Chr11:6799293 | 2.85E-35 | dispersed | |
Bma04g01183 | Bma-Chr4:31636296 | Bma11g00534 | Bma-Chr11:6799293 | 1.48E-27 | transposed | |
Bma06g00036 | Bma-Chr6:646393 | Bma11g00534 | Bma-Chr11:6799293 | 1.19E-24 | transposed | |
Bma07g01043 | Bma-Chr7:41991004 | Bma11g00534 | Bma-Chr11:6799293 | 2.27E-68 | transposed | |
Bma15g00586 | Bma-Chr15:7347116 | Bma11g00534 | Bma-Chr11:6799293 | 4.82E-42 | transposed | |
Bma01g00198 | Bma-Chr1:1736158 | Bma11g00534 | Bma-Chr11:6799293 | 5.97E-64 | wgd | |
Bma11g00534 | Bma-Chr11:6799293 | Bma06g00819 | Bma-Chr6:41823166 | 6.08E-65 | wgd | |
Bma11g00534 | Bma-Chr11:6799293 | Bma07g00513 | Bma-Chr7:6393305 | 9.46E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58046 | PF00847 | AP2 | 4.50E-14 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00534 | K09286 | - | csv:101219745 | 235.343 |