Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00549 ATGTCGTGGCAGGCGTACGTAGATGAACATTTGATGTGCGAAATCGATGGCCAGGGCCAGCATCTTGCCGCCGCGGCAATCCTCGGCCATGACGGCAGTGTTTGGGCCCAAAGCTCTTCCTTCCCTCAGTTGAAACCCAAGGAGATAGCTGACATACTCAAAGATTTTGAAGAACCAGGTCACCTTGCTCCTACAGGTTTACACCTTGGGGCTGCAAAATACATGGTAATCCAAGGAGAGGCTGGTGCTGTCATCCGTGGGAAGAAGGGATCTGGAGGAATCACCATTAAGAAGACTGGACAAGCCCTAATTTTTGGCATCTATGAAGAGCCTGTCACTCCAGGACAGTGCAACATGGTCGTTGAGAGGTTGGGGGATTACTTGATTGACCAAGGCCTTTAA 402 50.5 MSWQAYVDEHLMCEIDGQGQHLAAAAILGHDGSVWAQSSSFPQLKPKEIADILKDFEEPGHLAPTGLHLGAAKYMVIQGEAGAVIRGKKGSGGITIKKTGQALIFGIYEEPVTPGQCNMVVERLGDYLIDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7350242 7352011 - Bma006042.1 Bma11g00549 90951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00549 133 PANTHER PROFILIN 1 133 - -
Bma11g00549 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Bma11g00549 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Bma11g00549 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Bma11g00549 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Bma11g00549 133 SMART prof_2 1 133 IPR005455 GO:0003779
Bma11g00549 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Bma11g00549 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Bma11g00549 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Bma11g00549 133 CDD PROF 2 132 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00212 Bma-Chr1:1882863 Bma11g00549 Bma-Chr11:7350242 3.11E-75 dispersed
Bma06g00836 Bma-Chr6:42349059 Bma11g00549 Bma-Chr11:7350242 5.93E-76 dispersed
Bma11g00546 Bma-Chr11:7222520 Bma11g00549 Bma-Chr11:7350242 3.50E-96 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00549 K05759 - jre:109010102 250.751