Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00553 | ATGTTCGATTTCAAGGTGAAGAAATGCGCTCGCGGCAGTTCACATGATTGGACACAGTGTCCGTACGCTCATCCCGGGGAGAAAGCCCGCCGGAGAGACTTGAGGAAGTATCACTACTCCGGTACTACTTGCCCGGAGTTCCGGAATGGAATTTGTAAGAGGGGTGATTTGTGCGAGTTCGCGCATGGCGTTTTCGAGAGCTGGCTCCACCCTGCTCGTTATCGAACGCAGCCATGCAAGGATGGGACGAGCTGTAGACGATTGGTCTGCTTCTTCGCTCACACTCCTCAGCAGCTCAGAGTACTCCCGGAGCAGAACTCCAGAAGTTCCACTGATGGGTCACCGGCAATTGAAGCTTTGTTTGTGAGTTCGTTTCCTTTTTTGCCCTCGCCGATCTCTGTTTCTCCTCTAGCGACTCCGATTGAGTCTCCACCACTGTCGCCGATGAGCCGTTCTCTAGGTTCAACGCCGATGAAAGAAATGACGTCATCTCTTCGGAGTCTGCAGCTTTGCAAGGTCAAGTCTTTACCTTCTTCAAGAAAAGTTCAAGTGGGGCCTCCTGTTTTCGGATCTCCGACGCGAAACGGGTACTTCAGTCTGCCTACTACCCCGACCCGGATTCGAACGTTTTCTGGAATCAGGCGCCTCGACTCCTGGGAAGAACATTTCGAAGAGGAGCCAGTGATGGAGCGGGTAGAATCGGGGAAAGATCTGAGAGCAAAAATGTACGAGAAGCTTAAAAAGGAAAATTCTCTGGATCGAATCGATCCATCCCCTTCATTTGACCCGGAACTCTATCGGGTTACAAAGTCCATCATCAGTTGA | 825 | 51.39 | MFDFKVKKCARGSSHDWTQCPYAHPGEKARRRDLRKYHYSGTTCPEFRNGICKRGDLCEFAHGVFESWLHPARYRTQPCKDGTSCRRLVCFFAHTPQQLRVLPEQNSRSSTDGSPAIEALFVSSFPFLPSPISVSPLATPIESPPLSPMSRSLGSTPMKEMTSSLRSLQLCKVKSLPSSRKVQVGPPVFGSPTRNGYFSLPTTPTRIRTFSGIRRLDSWEEHFEEEPVMERVESGKDLRAKMYEKLKKENSLDRIDPSPSFDPELYRVTKSIIS | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7572913 | 7573737 | - | Bma006047.1 | Bma11g00553 | 90955 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00553 | 274 | Pfam | CCCH-type zinc finger | 43 | 63 | IPR041367 | - | |
Bma11g00553 | 274 | ProSiteProfiles | Zinc finger C3H1-type profile. | 39 | 65 | IPR000571 | GO:0046872 | |
Bma11g00553 | 274 | PANTHER | UNKEMPT FAMILY MEMBER | 1 | 269 | IPR045234 | - | |
Bma11g00553 | 274 | Gene3D | - | 38 | 102 | - | - | |
Bma11g00553 | 274 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 1 | 269 | - | - | |
Bma11g00553 | 274 | SUPERFAMILY | CCCH zinc finger | 37 | 66 | IPR036855 | GO:0046872 | |
Bma11g00553 | 274 | SMART | c3hfinal6 | 73 | 96 | IPR000571 | GO:0046872 | |
Bma11g00553 | 274 | SMART | c3hfinal6 | 38 | 64 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma11g00553 | Bma-Chr11:7572913 | Bma04g01517 | Bma-Chr4:51197814 | 1.40E-52 | dispersed | |
Bma11g00553 | Bma-Chr11:7572913 | Bma11g00559 | Bma-Chr11:7612067 | 0 | proximal | |
Bma01g00217 | Bma-Chr1:1937404 | Bma11g00553 | Bma-Chr11:7572913 | 7.55E-109 | wgd | |
Bma11g00553 | Bma-Chr11:7572913 | Bma06g00840 | Bma-Chr6:42728230 | 6.19E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58047 | PF00642 | zf-CCCH | 7.20E-06 | CL0537 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00553 | - | - | jre:109010264 | 370.933 |