Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00553 ATGTTCGATTTCAAGGTGAAGAAATGCGCTCGCGGCAGTTCACATGATTGGACACAGTGTCCGTACGCTCATCCCGGGGAGAAAGCCCGCCGGAGAGACTTGAGGAAGTATCACTACTCCGGTACTACTTGCCCGGAGTTCCGGAATGGAATTTGTAAGAGGGGTGATTTGTGCGAGTTCGCGCATGGCGTTTTCGAGAGCTGGCTCCACCCTGCTCGTTATCGAACGCAGCCATGCAAGGATGGGACGAGCTGTAGACGATTGGTCTGCTTCTTCGCTCACACTCCTCAGCAGCTCAGAGTACTCCCGGAGCAGAACTCCAGAAGTTCCACTGATGGGTCACCGGCAATTGAAGCTTTGTTTGTGAGTTCGTTTCCTTTTTTGCCCTCGCCGATCTCTGTTTCTCCTCTAGCGACTCCGATTGAGTCTCCACCACTGTCGCCGATGAGCCGTTCTCTAGGTTCAACGCCGATGAAAGAAATGACGTCATCTCTTCGGAGTCTGCAGCTTTGCAAGGTCAAGTCTTTACCTTCTTCAAGAAAAGTTCAAGTGGGGCCTCCTGTTTTCGGATCTCCGACGCGAAACGGGTACTTCAGTCTGCCTACTACCCCGACCCGGATTCGAACGTTTTCTGGAATCAGGCGCCTCGACTCCTGGGAAGAACATTTCGAAGAGGAGCCAGTGATGGAGCGGGTAGAATCGGGGAAAGATCTGAGAGCAAAAATGTACGAGAAGCTTAAAAAGGAAAATTCTCTGGATCGAATCGATCCATCCCCTTCATTTGACCCGGAACTCTATCGGGTTACAAAGTCCATCATCAGTTGA 825 51.39 MFDFKVKKCARGSSHDWTQCPYAHPGEKARRRDLRKYHYSGTTCPEFRNGICKRGDLCEFAHGVFESWLHPARYRTQPCKDGTSCRRLVCFFAHTPQQLRVLPEQNSRSSTDGSPAIEALFVSSFPFLPSPISVSPLATPIESPPLSPMSRSLGSTPMKEMTSSLRSLQLCKVKSLPSSRKVQVGPPVFGSPTRNGYFSLPTTPTRIRTFSGIRRLDSWEEHFEEEPVMERVESGKDLRAKMYEKLKKENSLDRIDPSPSFDPELYRVTKSIIS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7572913 7573737 - Bma006047.1 Bma11g00553 90955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00553 274 Pfam CCCH-type zinc finger 43 63 IPR041367 -
Bma11g00553 274 ProSiteProfiles Zinc finger C3H1-type profile. 39 65 IPR000571 GO:0046872
Bma11g00553 274 PANTHER UNKEMPT FAMILY MEMBER 1 269 IPR045234 -
Bma11g00553 274 Gene3D - 38 102 - -
Bma11g00553 274 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 1 269 - -
Bma11g00553 274 SUPERFAMILY CCCH zinc finger 37 66 IPR036855 GO:0046872
Bma11g00553 274 SMART c3hfinal6 73 96 IPR000571 GO:0046872
Bma11g00553 274 SMART c3hfinal6 38 64 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00553 Bma-Chr11:7572913 Bma04g01517 Bma-Chr4:51197814 1.40E-52 dispersed
Bma11g00553 Bma-Chr11:7572913 Bma11g00559 Bma-Chr11:7612067 0 proximal
Bma01g00217 Bma-Chr1:1937404 Bma11g00553 Bma-Chr11:7572913 7.55E-109 wgd
Bma11g00553 Bma-Chr11:7572913 Bma06g00840 Bma-Chr6:42728230 6.19E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58047 PF00642 zf-CCCH 7.20E-06 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00553 - - jre:109010264 370.933