Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00559 | ATGGAGAAGGAACCCGGAGCAGATTTTGATGTGGAGTTGTCTGACGGTCCTGTGGATTCTTTCTCCTCCGATCACTTTCGGATGTTCGATTTCAAGGTGAAGAAATGCGCTCGCGGCAGTTCACATGATTGGACACAGTGTCCGTACGCTCATCCCGGGGAGAAAGCCCGCCGGAGAGACTTGAGGAAGTATCACTACTCCGGTACTACTTGCCCGGAGTTCCGGAATGGAATTTGTAAGAGGGGTGATTTGTGCGAGTTCGCGCATGGCGTTTTCGAGAGCTGGCTCCACCCTGCTCGTTATCGAACGCAGCCATGCAAGGATGGGACGAGCTGTAGACGATTGGTCTGCTTCTTCGCTCACACTCCTCAGCAGCTCAGAGTACTCCCGGAGCAGAACTCCAGAAGTTCCACTGATGGGTCACCGGCAATTGAAGCTTTGTTTGTGAGTTCGTTTCCTTTTTTGCCCTCGCCGATCTCTGTTTCTCCTCTAGCGACTCCGATTGAGTCTCCACCACTGTCGCCGATGAGCCGTTCTCTAGGTTCAACGCCGATGAAAGAAATGACGTCATCTCTTCGGAGTCTGCAGCTTTGCAAGGTCAAGTCTTTACCTTCTTCAAGAAAAGTTCAAGTGGGGCCTCCTGTTTTCGGATCTCCGACGCGAAACGGGTACTTCAGTCTGCCTACTACCCCGACCCGGATTCGAACGTTTTCTGGAATCAGGCGCCTCGACTCCTGGGAAGAACATTTCGAAGAGGAGCCAGTGATGGAGCGGGTAGAATCGGGGAAAGATCTGAGAGCAAAAATGTACGAGAAGCTTAAAAAGGAAAATTCTCTGGATCGAATCGATCCATCCCCTTCATTTGACCCGGAACTCTATCGGGTTACAAAGTCCATCATCAGTTGA | 906 | 51.32 | MEKEPGADFDVELSDGPVDSFSSDHFRMFDFKVKKCARGSSHDWTQCPYAHPGEKARRRDLRKYHYSGTTCPEFRNGICKRGDLCEFAHGVFESWLHPARYRTQPCKDGTSCRRLVCFFAHTPQQLRVLPEQNSRSSTDGSPAIEALFVSSFPFLPSPISVSPLATPIESPPLSPMSRSLGSTPMKEMTSSLRSLQLCKVKSLPSSRKVQVGPPVFGSPTRNGYFSLPTTPTRIRTFSGIRRLDSWEEHFEEEPVMERVESGKDLRAKMYEKLKKENSLDRIDPSPSFDPELYRVTKSIIS | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7612067 | 7612972 | + | Bma006053.1 | Bma11g00559 | 90961 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00559 | 301 | Gene3D | - | 65 | 129 | - | - | |
Bma11g00559 | 301 | SMART | c3hfinal6 | 65 | 91 | IPR000571 | GO:0046872 | |
Bma11g00559 | 301 | SMART | c3hfinal6 | 100 | 123 | IPR000571 | GO:0046872 | |
Bma11g00559 | 301 | PANTHER | UNKEMPT FAMILY MEMBER | 12 | 296 | IPR045234 | - | |
Bma11g00559 | 301 | Pfam | CCCH-type zinc finger | 70 | 90 | IPR041367 | - | |
Bma11g00559 | 301 | ProSiteProfiles | Zinc finger C3H1-type profile. | 66 | 92 | IPR000571 | GO:0046872 | |
Bma11g00559 | 301 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 12 | 296 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00217 | Bma11g00559 | CCT | |
Bma06g00840 | Bma11g00559 | CCT | |
Bma01g00217 | Bma11g00559 | ECH | |
Bma06g00840 | Bma11g00559 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00217 | Bma-Chr1:1937404 | Bma11g00559 | Bma-Chr11:7612067 | 1.10E-114 | dispersed | |
Bma06g00840 | Bma-Chr6:42728230 | Bma11g00559 | Bma-Chr11:7612067 | 3.99E-118 | dispersed | |
Bma11g00559 | Bma-Chr11:7612067 | Bma04g01517 | Bma-Chr4:51197814 | 3.34E-56 | dispersed | |
Bma11g00553 | Bma-Chr11:7572913 | Bma11g00559 | Bma-Chr11:7612067 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58048 | PF00642 | zf-CCCH | 8.10E-06 | CL0537 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00559 | - | - | jre:109010264 | 396.356 |