Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00559 ATGGAGAAGGAACCCGGAGCAGATTTTGATGTGGAGTTGTCTGACGGTCCTGTGGATTCTTTCTCCTCCGATCACTTTCGGATGTTCGATTTCAAGGTGAAGAAATGCGCTCGCGGCAGTTCACATGATTGGACACAGTGTCCGTACGCTCATCCCGGGGAGAAAGCCCGCCGGAGAGACTTGAGGAAGTATCACTACTCCGGTACTACTTGCCCGGAGTTCCGGAATGGAATTTGTAAGAGGGGTGATTTGTGCGAGTTCGCGCATGGCGTTTTCGAGAGCTGGCTCCACCCTGCTCGTTATCGAACGCAGCCATGCAAGGATGGGACGAGCTGTAGACGATTGGTCTGCTTCTTCGCTCACACTCCTCAGCAGCTCAGAGTACTCCCGGAGCAGAACTCCAGAAGTTCCACTGATGGGTCACCGGCAATTGAAGCTTTGTTTGTGAGTTCGTTTCCTTTTTTGCCCTCGCCGATCTCTGTTTCTCCTCTAGCGACTCCGATTGAGTCTCCACCACTGTCGCCGATGAGCCGTTCTCTAGGTTCAACGCCGATGAAAGAAATGACGTCATCTCTTCGGAGTCTGCAGCTTTGCAAGGTCAAGTCTTTACCTTCTTCAAGAAAAGTTCAAGTGGGGCCTCCTGTTTTCGGATCTCCGACGCGAAACGGGTACTTCAGTCTGCCTACTACCCCGACCCGGATTCGAACGTTTTCTGGAATCAGGCGCCTCGACTCCTGGGAAGAACATTTCGAAGAGGAGCCAGTGATGGAGCGGGTAGAATCGGGGAAAGATCTGAGAGCAAAAATGTACGAGAAGCTTAAAAAGGAAAATTCTCTGGATCGAATCGATCCATCCCCTTCATTTGACCCGGAACTCTATCGGGTTACAAAGTCCATCATCAGTTGA 906 51.32 MEKEPGADFDVELSDGPVDSFSSDHFRMFDFKVKKCARGSSHDWTQCPYAHPGEKARRRDLRKYHYSGTTCPEFRNGICKRGDLCEFAHGVFESWLHPARYRTQPCKDGTSCRRLVCFFAHTPQQLRVLPEQNSRSSTDGSPAIEALFVSSFPFLPSPISVSPLATPIESPPLSPMSRSLGSTPMKEMTSSLRSLQLCKVKSLPSSRKVQVGPPVFGSPTRNGYFSLPTTPTRIRTFSGIRRLDSWEEHFEEEPVMERVESGKDLRAKMYEKLKKENSLDRIDPSPSFDPELYRVTKSIIS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7612067 7612972 + Bma006053.1 Bma11g00559 90961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00559 301 Gene3D - 65 129 - -
Bma11g00559 301 SMART c3hfinal6 65 91 IPR000571 GO:0046872
Bma11g00559 301 SMART c3hfinal6 100 123 IPR000571 GO:0046872
Bma11g00559 301 PANTHER UNKEMPT FAMILY MEMBER 12 296 IPR045234 -
Bma11g00559 301 Pfam CCCH-type zinc finger 70 90 IPR041367 -
Bma11g00559 301 ProSiteProfiles Zinc finger C3H1-type profile. 66 92 IPR000571 GO:0046872
Bma11g00559 301 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 12 296 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00217 Bma11g00559 CCT
Bma06g00840 Bma11g00559 CCT
Bma01g00217 Bma11g00559 ECH
Bma06g00840 Bma11g00559 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00217 Bma-Chr1:1937404 Bma11g00559 Bma-Chr11:7612067 1.10E-114 dispersed
Bma06g00840 Bma-Chr6:42728230 Bma11g00559 Bma-Chr11:7612067 3.99E-118 dispersed
Bma11g00559 Bma-Chr11:7612067 Bma04g01517 Bma-Chr4:51197814 3.34E-56 dispersed
Bma11g00553 Bma-Chr11:7572913 Bma11g00559 Bma-Chr11:7612067 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58048 PF00642 zf-CCCH 8.10E-06 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00559 - - jre:109010264 396.356