Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00599 ATGGATGGAGGGGCTTCATTTAACCCTCGCACGGTGGAGGAAGTTTTTAGGGACTTTAAGGGTCGTCGAGCTGGCATGATTAAAGCTCTTACCACTAACCTGGGTATCAATTTTGCAAGAGATGAAATGCAAGAAAAGGATTGGCTATCACTGGTTGCAGTTCACGGCGATGCTTGGTTGCTCTCCGTAGCTTTCTATTTTGGTGCCAGATTTGGTTTCAACAAAGCTGACAGTCTTTTCAGGTCGATAAATGATCTACCGACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAAGGGAAAGAGAAGCCATCAGTTTCAAATAATGGCAACAACAAAACCAAATCAGGCTCCAAAGGGGTAATTGAGTTTTACCAAGTGTCTTCCAACTGTGACGTTATGATGCCAAAGGAGGAAGAGAGAATGGGATTGGAGGATGAAGATGGGGAAGGGGAGGAGGAGGAGCATTCCTTATGTGAGGCCTGTAACGGGAGCTATACATCAGACCAGTTCTGGATTTTTTGCGATGCGTGTAGGAAGTGGTTTCACGGAAAGTGCGTCAAGATCACACCTGCCCGAGCCGAGCATATGAAGCAGTGCCCTTCCTGTACTAATAAGAGAGCACGCCCCTGA 636 46.38 MDGGASFNPRTVEEVFRDFKGRRAGMIKALTTNLGINFARDEMQEKDWLSLVAVHGDAWLLSVAFYFGARFGFNKADSLFRSINDLPTIFEVVTGSVKKQGKEKPSVSNNGNNKTKSGSKGVIEFYQVSSNCDVMMPKEEERMGLEDEDGEGEEEEHSLCEACNGSYTSDQFWIFCDACRKWFHGKCVKITPARAEHMKQCPSCTNKRARP 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8956353 8957881 - Bma006115.1 Bma11g00599 91001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00599 211 Pfam PHD-finger 160 207 IPR019787 -
Bma11g00599 211 PANTHER CPG BINDING PROTEIN 33 211 IPR045104 GO:0006355|GO:0042393
Bma11g00599 211 SUPERFAMILY FYVE/PHD zinc finger 148 208 IPR011011 -
Bma11g00599 211 SMART PHD_3 159 205 IPR001965 -
Bma11g00599 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 206 IPR013083 -
Bma11g00599 211 PANTHER CPG BINDING PROTEIN 3 33 IPR045104 GO:0006355|GO:0042393
Bma11g00599 211 CDD PHD_AL_plant 159 207 IPR044104 -
Bma11g00599 211 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 33 211 - -
Bma11g00599 211 ProSiteProfiles Zinc finger PHD-type profile. 157 207 IPR019787 -
Bma11g00599 211 Pfam Alfin 33 95 IPR021998 GO:0006355|GO:0042393
Bma11g00599 211 Pfam Alfin 11 33 IPR021998 GO:0006355|GO:0042393
Bma11g00599 211 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00599 - - - qsu:112023497 262.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00252 Bma11g00599 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00599 Bma-Chr11:8956353 Bma04g00716 Bma-Chr4:7308242 3.50E-50 dispersed
Bma11g00599 Bma-Chr11:8956353 Bma06g00890 Bma-Chr6:43804599 1.22E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g114 . . . Bda11g01029 Bpe01g00604 . . Bma11g00599 . . . . . . . . . . . . . . . . Cla11g00146 Cam11g0168 Cec11g0170 Cco11g0181 Clacu11g0303 Cmu11g0156 Cre11g0655 . . . Cone7ag0758 . . . . . . Bda02g00379 . . . Bma01g00252 . . . . . . . . . . Bhi06g01609 . . . . . . Cla03g01469 Cam03g1545 Cec03g1587 Cco03g1580 Clacu03g1569 Cmu03g2125 Cre03g1798 Lsi11g00171 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00038 . 1 236 Alfin-like Transcription Factor Family AT1G14510 83.9 3.4e-101 364.8
Bma02g00545 CCT,ECH 1 247 Alfin-like Transcription Factor Family AT1G14510 68.3 2.1e-95 345.5
Bma01g00252 CCT 1 220 Alfin-like Transcription Factor Family AT1G14510 69.8 7.9e-90 327.0
Bma06g00890 . 1 250 Alfin-like Transcription Factor Family AT1G14510 68.4 6.9e-86 313.9
Bma08g01024 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.0 1.6e-79 292.7
Bma01g02201 CCT,ECH 1 237 Alfin-like Transcription Factor Family AT1G14510 56.0 2.2e-76 282.3
Bma01g01743 . 7 236 Alfin-like Transcription Factor Family AT1G14510 57.1 7.1e-75 277.3
Bma05g00910 . 1 166 Alfin-like Transcription Factor Family AT1G14510 78.9 2.0e-64 242.7
Bma04g00716 . 4 221 Alfin-like Transcription Factor Family AT1G14510 56.6 1.5e-61 233.0
Bma01g01801 . 1 201 Alfin-like Transcription Factor Family AT1G14510 57.5 5.0e-60 228.0
Bma02g00545 CCT,ECH 1 250 Alfin-like Transcription Factor Family AT5G26210 71.0 2.5e-104 375.2
Bma06g00890 . 1 252 Alfin-like Transcription Factor Family AT5G26210 79.5 1.0e-100 363.2
Bma01g00252 CCT 1 222 Alfin-like Transcription Factor Family AT5G26210 73.6 2.0e-96 349.0
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT5G26210 61.8 2.0e-85 312.4
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT5G26210 57.9 4.0e-81 298.1
Bma01g01743 . 4 238 Alfin-like Transcription Factor Family AT5G26210 58.6 2.0e-80 295.8
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G26210 70.0 5.4e-78 287.7
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT5G26210 55.1 1.7e-63 239.6
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT5G26210 57.8 3.7e-63 238.4
Bma11g00599 CCT 1 210 Alfin-like Transcription Factor Family AT5G26210 51.2 1.0e-60 230.3
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G26210 65.9 3.0e-52 202.2
Bma01g00252 CCT 3 222 Alfin-like Transcription Factor Family AT3G42790 76.0 2.0e-98 355.5
Bma02g00545 CCT,ECH 3 250 Alfin-like Transcription Factor Family AT3G42790 68.3 1.2e-95 346.3
Bma06g00890 . 3 252 Alfin-like Transcription Factor Family AT3G42790 78.0 6.2e-95 344.0
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT3G42790 58.5 7.3e-80 293.9
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT3G42790 58.2 1.2e-79 293.1
Bma01g01743 . 6 238 Alfin-like Transcription Factor Family AT3G42790 56.4 7.6e-77 283.9
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT3G42790 67.5 4.9e-76 281.2
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT3G42790 52.9 2.6e-61 232.3
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT3G42790 55.1 3.4e-61 231.9
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G42790 61.3 3.9e-49 191.8
Bma08g01024 . 1 240 Alfin-like Transcription Factor Family AT5G05610 79.7 5.7e-114 407.1
Bma01g01743 . 4 239 Alfin-like Transcription Factor Family AT5G05610 74.3 1.6e-103 372.5
Bma02g00545 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT5G05610 66.4 5.8e-90 327.4
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT5G05610 68.9 8.6e-86 313.5
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT5G05610 73.7 2.8e-84 308.5
Bma01g00252 CCT 4 222 Alfin-like Transcription Factor Family AT5G05610 60.0 3.1e-83 305.1
Bma06g00890 . 4 252 Alfin-like Transcription Factor Family AT5G05610 57.6 3.2e-80 295.0
Bma01g02201 CCT,ECH 6 240 Alfin-like Transcription Factor Family AT5G05610 55.2 1.1e-72 270.0
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G05610 61.1 4.6e-71 264.6
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G05610 59.4 1.8e-46 183.0
Bma08g01024 . 43 240 Alfin-like Transcription Factor Family AT3G11200 82.1 2.0e-95 345.5
Bma01g01743 . 42 239 Alfin-like Transcription Factor Family AT3G11200 76.2 2.4e-85 312.0
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT3G11200 69.3 1.2e-84 309.7
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT3G11200 74.0 3.0e-83 305.1
Bma02g00545 CCT,ECH 44 249 Alfin-like Transcription Factor Family AT3G11200 62.6 8.9e-72 266.9
Bma01g00252 CCT 44 222 Alfin-like Transcription Factor Family AT3G11200 61.1 1.6e-68 256.1
Bma06g00890 . 44 252 Alfin-like Transcription Factor Family AT3G11200 60.3 1.2e-65 246.5
Bma12g00038 . 52 236 Alfin-like Transcription Factor Family AT3G11200 63.2 3.0e-59 225.3
Bma01g02201 CCT,ECH 44 240 Alfin-like Transcription Factor Family AT3G11200 53.5 2.1e-57 219.2
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G11200 57.7 6.4e-46 181.0
Bma11g00599 CCT 34 210 Alfin-like Transcription Factor Family AT3G11200 52.0 4.6e-44 174.9
Bma12g00038 . 1 169 Alfin-like Transcription Factor Family AT2G02470 82.2 7.2e-75 277.3
Bma01g00252 CCT 1 146 Alfin-like Transcription Factor Family AT2G02470 78.8 5.7e-64 241.1
Bma06g00890 . 1 155 Alfin-like Transcription Factor Family AT2G02470 74.8 1.1e-62 236.9
Bma02g00545 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 1.4e-62 236.5
Bma08g01024 . 8 153 Alfin-like Transcription Factor Family AT2G02470 67.8 3.2e-54 208.8
Bma01g02201 CCT,ECH 1 145 Alfin-like Transcription Factor Family AT2G02470 66.2 5.6e-51 198.0
Bma01g01743 . 7 154 Alfin-like Transcription Factor Family AT2G02470 63.6 8.1e-50 194.1
Bma04g00716 . 4 116 Alfin-like Transcription Factor Family AT2G02470 69.8 2.2e-39 159.5
Bma06g00890 . 3 153 Alfin-like Transcription Factor Family AT5G20510 79.5 5.8e-69 257.3
Bma02g00545 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 7.1e-67 250.4
Bma01g00252 CCT 3 139 Alfin-like Transcription Factor Family AT5G20510 81.0 3.0e-65 245.0
Bma12g00038 . 3 173 Alfin-like Transcription Factor Family AT5G20510 69.9 1.6e-63 239.2
Bma08g01024 . 7 172 Alfin-like Transcription Factor Family AT5G20510 59.5 1.3e-52 203.0
Bma01g01743 . 6 144 Alfin-like Transcription Factor Family AT5G20510 65.0 1.9e-51 199.1
Bma01g02201 CCT,ECH 1 164 Alfin-like Transcription Factor Family AT5G20510 61.2 3.2e-51 198.4
Bma04g00716 . 4 131 Alfin-like Transcription Factor Family AT5G20510 59.0 5.3e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58051 PF12165 Alfin 1.10E-25 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma11g00599 Bma_Chr11 FPKM 6.984584 9.521113 16.980633 17.867252 36.712761 33.034035 34.17384 0.0 0.0 0.0