Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00599 | ATGGATGGAGGGGCTTCATTTAACCCTCGCACGGTGGAGGAAGTTTTTAGGGACTTTAAGGGTCGTCGAGCTGGCATGATTAAAGCTCTTACCACTAACCTGGGTATCAATTTTGCAAGAGATGAAATGCAAGAAAAGGATTGGCTATCACTGGTTGCAGTTCACGGCGATGCTTGGTTGCTCTCCGTAGCTTTCTATTTTGGTGCCAGATTTGGTTTCAACAAAGCTGACAGTCTTTTCAGGTCGATAAATGATCTACCGACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAAGGGAAAGAGAAGCCATCAGTTTCAAATAATGGCAACAACAAAACCAAATCAGGCTCCAAAGGGGTAATTGAGTTTTACCAAGTGTCTTCCAACTGTGACGTTATGATGCCAAAGGAGGAAGAGAGAATGGGATTGGAGGATGAAGATGGGGAAGGGGAGGAGGAGGAGCATTCCTTATGTGAGGCCTGTAACGGGAGCTATACATCAGACCAGTTCTGGATTTTTTGCGATGCGTGTAGGAAGTGGTTTCACGGAAAGTGCGTCAAGATCACACCTGCCCGAGCCGAGCATATGAAGCAGTGCCCTTCCTGTACTAATAAGAGAGCACGCCCCTGA | 636 | 46.38 | MDGGASFNPRTVEEVFRDFKGRRAGMIKALTTNLGINFARDEMQEKDWLSLVAVHGDAWLLSVAFYFGARFGFNKADSLFRSINDLPTIFEVVTGSVKKQGKEKPSVSNNGNNKTKSGSKGVIEFYQVSSNCDVMMPKEEERMGLEDEDGEGEEEEHSLCEACNGSYTSDQFWIFCDACRKWFHGKCVKITPARAEHMKQCPSCTNKRARP | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8956353 | 8957881 | - | Bma006115.1 | Bma11g00599 | 91001 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00599 | 211 | Pfam | PHD-finger | 160 | 207 | IPR019787 | - | |
Bma11g00599 | 211 | PANTHER | CPG BINDING PROTEIN | 33 | 211 | IPR045104 | GO:0006355|GO:0042393 | |
Bma11g00599 | 211 | SUPERFAMILY | FYVE/PHD zinc finger | 148 | 208 | IPR011011 | - | |
Bma11g00599 | 211 | SMART | PHD_3 | 159 | 205 | IPR001965 | - | |
Bma11g00599 | 211 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 206 | IPR013083 | - | |
Bma11g00599 | 211 | PANTHER | CPG BINDING PROTEIN | 3 | 33 | IPR045104 | GO:0006355|GO:0042393 | |
Bma11g00599 | 211 | CDD | PHD_AL_plant | 159 | 207 | IPR044104 | - | |
Bma11g00599 | 211 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 33 | 211 | - | - | |
Bma11g00599 | 211 | ProSiteProfiles | Zinc finger PHD-type profile. | 157 | 207 | IPR019787 | - | |
Bma11g00599 | 211 | Pfam | Alfin | 33 | 95 | IPR021998 | GO:0006355|GO:0042393 | |
Bma11g00599 | 211 | Pfam | Alfin | 11 | 33 | IPR021998 | GO:0006355|GO:0042393 | |
Bma11g00599 | 211 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 3 | 33 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00252 | Bma11g00599 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma11g00599 | Bma-Chr11:8956353 | Bma04g00716 | Bma-Chr4:7308242 | 3.50E-50 | dispersed | |
Bma11g00599 | Bma-Chr11:8956353 | Bma06g00890 | Bma-Chr6:43804599 | 1.22E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58051 | PF12165 | Alfin | 1.10E-25 | No_clan | Bma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00599 | - | - | qsu:112023497 | 262.307 |