Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00599 ATGGATGGAGGGGCTTCATTTAACCCTCGCACGGTGGAGGAAGTTTTTAGGGACTTTAAGGGTCGTCGAGCTGGCATGATTAAAGCTCTTACCACTAACCTGGGTATCAATTTTGCAAGAGATGAAATGCAAGAAAAGGATTGGCTATCACTGGTTGCAGTTCACGGCGATGCTTGGTTGCTCTCCGTAGCTTTCTATTTTGGTGCCAGATTTGGTTTCAACAAAGCTGACAGTCTTTTCAGGTCGATAAATGATCTACCGACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAAGGGAAAGAGAAGCCATCAGTTTCAAATAATGGCAACAACAAAACCAAATCAGGCTCCAAAGGGGTAATTGAGTTTTACCAAGTGTCTTCCAACTGTGACGTTATGATGCCAAAGGAGGAAGAGAGAATGGGATTGGAGGATGAAGATGGGGAAGGGGAGGAGGAGGAGCATTCCTTATGTGAGGCCTGTAACGGGAGCTATACATCAGACCAGTTCTGGATTTTTTGCGATGCGTGTAGGAAGTGGTTTCACGGAAAGTGCGTCAAGATCACACCTGCCCGAGCCGAGCATATGAAGCAGTGCCCTTCCTGTACTAATAAGAGAGCACGCCCCTGA 636 46.38 MDGGASFNPRTVEEVFRDFKGRRAGMIKALTTNLGINFARDEMQEKDWLSLVAVHGDAWLLSVAFYFGARFGFNKADSLFRSINDLPTIFEVVTGSVKKQGKEKPSVSNNGNNKTKSGSKGVIEFYQVSSNCDVMMPKEEERMGLEDEDGEGEEEEHSLCEACNGSYTSDQFWIFCDACRKWFHGKCVKITPARAEHMKQCPSCTNKRARP 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8956353 8957881 - Bma006115.1 Bma11g00599 91001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00599 211 Pfam PHD-finger 160 207 IPR019787 -
Bma11g00599 211 PANTHER CPG BINDING PROTEIN 33 211 IPR045104 GO:0006355|GO:0042393
Bma11g00599 211 SUPERFAMILY FYVE/PHD zinc finger 148 208 IPR011011 -
Bma11g00599 211 SMART PHD_3 159 205 IPR001965 -
Bma11g00599 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 206 IPR013083 -
Bma11g00599 211 PANTHER CPG BINDING PROTEIN 3 33 IPR045104 GO:0006355|GO:0042393
Bma11g00599 211 CDD PHD_AL_plant 159 207 IPR044104 -
Bma11g00599 211 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 33 211 - -
Bma11g00599 211 ProSiteProfiles Zinc finger PHD-type profile. 157 207 IPR019787 -
Bma11g00599 211 Pfam Alfin 33 95 IPR021998 GO:0006355|GO:0042393
Bma11g00599 211 Pfam Alfin 11 33 IPR021998 GO:0006355|GO:0042393
Bma11g00599 211 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 33 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00252 Bma11g00599 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00599 Bma-Chr11:8956353 Bma04g00716 Bma-Chr4:7308242 3.50E-50 dispersed
Bma11g00599 Bma-Chr11:8956353 Bma06g00890 Bma-Chr6:43804599 1.22E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58051 PF12165 Alfin 1.10E-25 No_clan Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00599 - - qsu:112023497 262.307