Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bma11g00612	ATGGGGGTTGGTAAGATATCATGGCGATCAGTTCTTCCATGCTGCGAGCCGGAGTGCGGGTCCAAGACCTGCACGAAAGTTATGGCGAAACAGAGTTCGTTTCAAAGGATTTCGCATCTGGAATTGAGCAATCCGGCGTCGATGCTGTCGGAGGATCTTTCGATGTCTCTTGTGGGATCAGATATTCATGTCTTCACCCTGGCTGAGTTGAAAGTGATAACCCAGAATTTCTCGGCTTCTAATTTCATCGGGGAAGGTGGGTTTGGACCTGTACACAAGGGTTTCATCGATGACAAGCTTAGACCAGGACTGAAGGCTCAGCCGGTGGCGGTGAAGTTATTGGATTTGGATGGCACGCAGGGACATAGGGAGTGGCTGACTGAGGTGATTTTTCTGGGTCAGCTGAGGCATCCACACCTGGTAAAGCTTATAGGGTATTGCTGTGAAGATGAACACAGGCTACTCGTTTATGAATACATGCCGAGAGGCAGCTTAGAGAATCAACTCTTTAGAAGGTATTCGGCGTCGCTGCCGTGGTCGTCGAGAATGAAAATCGCTCTCGGTGCTGCGAAGGGTCTCGCTTTCCTCCACGAGGCGGAAAAACCAGTCATATATAGGGACTTCAAGGCTTCAAATATACTGCTAGACTCCGATTTCAGTTCAAAACTCTCAGACTTTGGTTTGGCGAAAGATGGGCCAGAAGGCGACGACACCCACGTCTCAACAAGAGTGATGGGGACGCATGGCTACGCTGCTCCCGAATATATCATGACTGGGCACTTGACGGCAATGAGTGACGTATACAGCTTCGGCGTGGTGCTGCTAGAGCTTCTAACAGGGCGGAGATCGGTGGACAAGAGCCGGCCTCATAGGGAGCACAACTTGGTGGACTGGGCAAGGCCAATGCTCAATGACCCTCGAAAGCTTGCCCGAGTAATGGACCCGAGGCTGGAAGGGCAGTACTCGGAAGTGGGCTCTCGGAAGGCGGCAGAATTGGCTTATCAATGCCTGAGCCACCGCCCCAAGCACCGGCCCACCATGAGCGCCATCGTTAAGACTTTGGAGCCGCTCAAAGACTTCGATGACATTCTCCCCGGACCCTTCGTCTACACTGTTGCACCAGAGAGCCATGATTCGGGGAAGGAAGATGTCAAACAAAGCCCAGCACAGAGAGATGTAAACAAGGAAAACGGGGAGCGCCGCCACCATAATCATCAACGGAGATATCCAAAATCACCCAACGCCTACTCGGAGACAGCTCAGGGTCATAATAACAGAAAGTAA	1284	51.79	MGVGKISWRSVLPCCEPECGSKTCTKVMAKQSSFQRISHLELSNPASMLSEDLSMSLVGSDIHVFTLAELKVITQNFSASNFIGEGGFGPVHKGFIDDKLRPGLKAQPVAVKLLDLDGTQGHREWLTEVIFLGQLRHPHLVKLIGYCCEDEHRLLVYEYMPRGSLENQLFRRYSASLPWSSRMKIALGAAKGLAFLHEAEKPVIYRDFKASNILLDSDFSSKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKSRPHREHNLVDWARPMLNDPRKLARVMDPRLEGQYSEVGSRKAAELAYQCLSHRPKHRPTMSAIVKTLEPLKDFDDILPGPFVYTVAPESHDSGKEDVKQSPAQRDVNKENGERRHHNHQRRYPKSPNAYSETAQGHNNRK	427

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	9251429	9253049	+	Bma006132.1	Bma11g00612	91014

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bma11g00612	427	Pfam	Protein tyrosine and serine/threonine kinase	81	354	IPR001245	GO:0004672\|GO:0006468
	Bma11g00612	427	ProSiteProfiles	Protein kinase domain profile.	77	369	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bma11g00612	427	PANTHER	OS01G0588500 PROTEIN-RELATED	23	397	-	-
	Bma11g00612	427	CDD	STKc_IRAK	83	357	-	-
	Bma11g00612	427	MobiDBLite	consensus disorder prediction	410	427	-	-
	Bma11g00612	427	MobiDBLite	consensus disorder prediction	371	427	-	-
	Bma11g00612	427	Gene3D	Phosphorylase Kinase; domain 1	41	159	-	-
	Bma11g00612	427	Gene3D	Transferase(Phosphotransferase) domain 1	160	363	-	-
	Bma11g00612	427	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	203	215	IPR008271	GO:0004672\|GO:0006468
	Bma11g00612	427	MobiDBLite	consensus disorder prediction	376	400	-	-
	Bma11g00612	427	PANTHER	RECEPTOR-LIKE PROTEIN KINASE-RELATED	23	397	-	-
	Bma11g00612	427	SUPERFAMILY	Protein kinase-like (PK-like)	54	355	IPR011009	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bma07g00572	Bma11g00612	BCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bma04g01242	Bma-Chr4:36845565	Bma11g00612	Bma-Chr11:9251429	1.88E-160	dispersed
	Bma10g00363	Bma-Chr10:3425549	Bma11g00612	Bma-Chr11:9251429	8.95E-161	dispersed
	Bma11g00612	Bma-Chr11:9251429	Bma14g01544	Bma-Chr14:31239035	1.06E-140	dispersed
	Bma11g00612	Bma-Chr11:9251429	Bma07g00572	Bma-Chr7:7966617	0	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	66787	PF07714	PK_Tyr_Ser-Thr	4.00E-47	CL0016	Bma	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bma11g00612	-		-	jre:109008510	665.996