Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00622 CTTGAAAGCATATCCGAGGAAACTGCAGTCATTGAAAGAAAACAGACCTTTTTAAATTTCGTCCCATACATTCGATCCGGAGAGTGGTCGGACATTGGAGGTCGTTCTCACATGGAGGATACTCACATCTGCATTGGGAATTTGGCTAAGAAATTTGGTTATAATCTCACTGACGAAGCTATCTCTTTCTATGGCGTAAGTTCTCTCTCTAATCCCTTCAGAACCATCATTGAGAACTTTTTATTGAACTTAAAAAATCGAACCGGGATTGCTTATTTTCAGGTATTTGATGGTCATGGAGGAAGCGGTGCTGCAAAATTCGTGCGTGATCACTTACCGAGAGTTATTGTCGAAGATGCAGACTTTCCTTTGGAGCTCGAGAAGGTGATCACAAGGTCGTTTATGGAGACGGATGCTGCCTTTGCAAAAACATGCTCTGTCGAATCTTCCTTGAATATCATTTCTCGCAGGTCGTTGGTGGTGGCAAATGCCGGAGATTGTCGGGCAGTGCTTTCCCGGCGTGGAGGTGCAGTCGAAATGTCTAGAGACCACAGACCATGTTGTTCAAAAGAGAGGATAAGAATCGAGGCCTTGGGAGGATACATCGATGACGATTATCTAAACGGACAATTAGGCGTAACTCGGGCATTGGGTGATTGGCATCTAGAAGGGATGAAGGAATCAAGCGGAAAGGGTGGCCCACTTAGTGCAGAACCCGAACTTAAACTCACGACATTGACGACGGATGACGAATTCTTGATCATAGGCAGCGATGGAATATGGGATGTTTTCACGAGCCAAAACGCAGTCGATTTTGCTCGGAGGAGACTTCAAGAGCACAACGACGTGAAGTTGTGCTGCAAAGAAGTTGTCGAGGAAGCTGTAAAGCGACGGGCAGTGGATAATCTGACAGTTGTCATAGTGAGCTTTCACTTGGAGCCGCCTCAATCTTTGGCGGTCCAGAGGGGGAGAGTGAGGAGAAGCATATCAGAAGAGGGGCTGCAGAACCTTAAATTTCTGTTGGAAGGATAG 1032 46.22 LESISEETAVIERKQTFLNFVPYIRSGEWSDIGGRSHMEDTHICIGNLAKKFGYNLTDEAISFYGVSSLSNPFRTIIENFLLNLKNRTGIAYFQVFDGHGGSGAAKFVRDHLPRVIVEDADFPLELEKVITRSFMETDAAFAKTCSVESSLNIISRRSLVVANAGDCRAVLSRRGGAVEMSRDHRPCCSKERIRIEALGGYIDDDYLNGQLGVTRALGDWHLEGMKESSGKGGPLSAEPELKLTTLTTDDEFLIIGSDGIWDVFTSQNAVDFARRRLQEHNDVKLCCKEVVEEAVKRRAVDNLTVVIVSFHLEPPQSLAVQRGRVRRSISEEGLQNLKFLLEG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9801234 9802828 + Bma006158.1 Bma11g00622 91024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00622 343 SMART PP2C_4 15 308 IPR001932 -
Bma11g00622 343 Pfam Protein phosphatase 2C 85 302 IPR001932 -
Bma11g00622 343 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 66 - -
Bma11g00622 343 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 77 331 - -
Bma11g00622 343 ProSiteProfiles PPM-type phosphatase domain profile. 25 310 IPR001932 -
Bma11g00622 343 CDD PP2Cc 24 310 IPR001932 -
Bma11g00622 343 PANTHER PROTEIN PHOSPHATASE 2C 1 66 IPR015655 GO:0004722|GO:0006470
Bma11g00622 343 PANTHER PROTEIN PHOSPHATASE 2C 77 331 IPR015655 GO:0004722|GO:0006470
Bma11g00622 343 SUPERFAMILY PP2C-like 13 311 IPR036457 -
Bma11g00622 343 Gene3D - 8 313 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00999 Bma11g00622 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00034 Bma-Chr2:353468 Bma11g00622 Bma-Chr11:9801234 1.22E-119 dispersed
Bma11g00622 Bma-Chr11:9801234 Bma13g00101 Bma-Chr13:1054087 2.33E-72 dispersed
Bma11g00622 Bma-Chr11:9801234 Bma04g00294 Bma-Chr4:2356598 4.18E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58053 PF00481 PP2C 1.40E-57 CL0238 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00622 K14803 - fve:101296420 457.988