Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00625 ATGGCATTTGATCAGAATTTGATTCCCAAAGACTTGCGACCATTAAACGTGGCTAGAACTGGGGTTGAGGAGCCTCGTATTACACCGCCGGCAACTGCCCTTCGAGGTTACAAAGGGCATATTCCGAACGCAGTTTGTGATGTTGTGAGTCATAACTCTGTACCAGTAATCTACCCTGCTATGGTCTCTGATGTAGGATCTACAGCCACGGGGTATGGAAATGTAGTGCAAGGTGTTTCCCCATGGTGCCCTCGTGCCCCTGCTCCTGCCTCATTCGTCCAACCAGCTATGGATCCTTCTCTTAGATTGGCTTACAGTGTAAATCCCAATACTTTTAACCATCTTCGTCCCAATGGTGTCGATGTTGGCAGTGGTGGTTTAAGTTCTAGTCCAAACTTGAGTAATCAAATTGTTGGTAATTGCAACGATGTCCTGGCGAGTGTTGGTTCTAGTTCCAACTGGTGTAACCTGGTCAATGCCTCTGCTGTAGATGAAACTAGTGGTGATTCAATTGGTTCTCTTGGCAATGTAATCAGCCGGGACAGTGGAGCTGATCGGTTGAGTGATGAGGGTGGGGATGGTTCGTTGTCAGGGAAAATGAAGTTTTTGTGCAGTTTTGGTGGCAAGATCTTGCCCAGACCAAGTGACAGAATGCTTAGATACGTGGGAGGACAAACGAGAATAATTAGTGTTAGAAGAGACGTGAGTTTCGATGAGCTTGCTCAAAAGTTTTTAGATGCATATGGGCAGCCAGTAGTTATTAAGTATCAACTCCCCGGAGAAGATCTCGATGCGTTCAATTTTCGTAGCCTACAAGTGGACGATAATTTAAGAGCTCGGCAAATTGGAACTGGAGCATTAGAAGAAAACATTCTTGAACTGGGAGCTGGGGCTCGAACCCATGTCGTTGGACATGTGGATGGTCAAGTTGGTACATCTCCATTGGCGACTGATGCCTGCTCACGAAATCTTAGGGTGAATAATGAAAATGAAAGAATCCCTCCCAACCTCGAAGGTATCATTGGGAGAGCAAGTGAGGGGCAGTCCCCTTATGTGGCATTTGTTGGCAATCCTCCTCAATCCTTTCAAGATGATGTTCTTCAGCCGAATCCGGAGCTACTGCCTTATCCAGTCGGACAGAACACCAGACCTACCACCAATTACGATGATTGTTTAGTCAGAGGTATCACTTCCAAGACTTTTGAGAATGTTATTCAGGGATCTCCAGAAGAATATTCTGATAAACTTCCTGGCCCTCTTGTGAGTGAAGATTATCTGGATGTACCCATTTCTTATGACCGTCTGGGAATAATTGATGATAATGTGAAAATGGAAGATAATTTTCTTTGGAATCCAAAATCAGTTGTAGAGATGGATGTTTGGCTAGATGAGGAAATTAGAAAGCACAAAATGGCTCCGGATACTAATCATAATAGACCACCACTAGGAGCTTTGTCATCAGAATTGATGAACATGGGAAATTTTCAACCAGTCCAGCCTTCTGAGGTTGCAGAATTATCTAGTTTGGATTTCCCGGGACAGCATCCGCAGGCAAATATTGGAATTCATCCGTTGGAGTGTGACACTTTTTTTCATGGACGAAATCCTCAGTTGTTGAGTGTCGGGCTTAACCAACAAAATCATAACATTCCATCGCACTTTCACTCCAAGGTTGCACCCAGTGATGTTGAAGCTGTTGCTTTGATAGGAGATGAACTCCCCTCCAAATTTCCACACAGTAGACATGGAGATGTTCCGGATTCCTCAAATTCACTGTTTAGTGAGAATGATCCTTGGAATTTTAACCACGACGCTCGTTGTCTGCCTCCAACGACACTGCTAGACAAAGCAAATCTTGGTTTCCCAGTTTCTGATGGTTTAGGTCGTTTACAGATGATAAGGAACAGTGACCTCGAGGAGATGAAAGAACTCGGTTCTGGTACCTATGGCACCGTTTATCATGGGAAATGGAGGGGGACAGATGTTGCCATCAAAAGAATTAACGATAGGTGCTTTGCTGGGAAACCTTCAGAAAAGGAACGCTTGAGAGAGGATTTCTGGAATGAAGCAATTAAACTTGCTGACTTGCATCATCCAAACGTGGTAGCTTTCTATGGTGTCGTGCTTGATGGGCCCGGTGGATCTGTGGCAACAGTGACGGAGTATATGGTCAATGGATCGCTAAGAAATGCTTTGCAGAAAAATGAGAAGAGTCTTGACAAGCGCAAACGACTCTTGATTGCAATGGATGCAGCTTTTGGAATGGAATACTTGCATTCAAAGAACATAGTGCATTTTGATTTGAAAAGTGATAACTTATTGGTCAATCTTAGAGACCCTCATCGTCCGATTTGCAAGGTTGGTGATTTGGGTCTATCCAAGGTAAAATGTCAAACGTTGATATCAGGGGGAGTGCGAGGAACACTGCCGTGGATGGCTCCAGAACTTTTGAATGGTAGCAGTAGCCTTGTGTCCGAGAAAGTTGATGTCTTCTCATTCGGGATCGTAATGTGGGAACTTCTTACCGGAGAGGAACCATATGCTGATATGCACTATGGCGCCATAATTGGCGGTATCGTGAGCAACACATTGCGGCCACCTGTGCCAGAATATTGTGATGCAGAATGGAAATTAATGATGGAGAGGTGCTGGTCTACCGAGCAATTTGAGAGGCCGAGTTTCACGGATATTGCCAACGAGTTACGATCAATGGCCGCGAAACTTCCGCCGAAAGGACAGAATCAACAACAACTTCCCTCAACCCATATCCTAAGATGA 2778 44.74 MAFDQNLIPKDLRPLNVARTGVEEPRITPPATALRGYKGHIPNAVCDVVSHNSVPVIYPAMVSDVGSTATGYGNVVQGVSPWCPRAPAPASFVQPAMDPSLRLAYSVNPNTFNHLRPNGVDVGSGGLSSSPNLSNQIVGNCNDVLASVGSSSNWCNLVNASAVDETSGDSIGSLGNVISRDSGADRLSDEGGDGSLSGKMKFLCSFGGKILPRPSDRMLRYVGGQTRIISVRRDVSFDELAQKFLDAYGQPVVIKYQLPGEDLDAFNFRSLQVDDNLRARQIGTGALEENILELGAGARTHVVGHVDGQVGTSPLATDACSRNLRVNNENERIPPNLEGIIGRASEGQSPYVAFVGNPPQSFQDDVLQPNPELLPYPVGQNTRPTTNYDDCLVRGITSKTFENVIQGSPEEYSDKLPGPLVSEDYLDVPISYDRLGIIDDNVKMEDNFLWNPKSVVEMDVWLDEEIRKHKMAPDTNHNRPPLGALSSELMNMGNFQPVQPSEVAELSSLDFPGQHPQANIGIHPLECDTFFHGRNPQLLSVGLNQQNHNIPSHFHSKVAPSDVEAVALIGDELPSKFPHSRHGDVPDSSNSLFSENDPWNFNHDARCLPPTTLLDKANLGFPVSDGLGRLQMIRNSDLEEMKELGSGTYGTVYHGKWRGTDVAIKRINDRCFAGKPSEKERLREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKNEKSLDKRKRLLIAMDAAFGMEYLHSKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADMHYGAIIGGIVSNTLRPPVPEYCDAEWKLMMERCWSTEQFERPSFTDIANELRSMAAKLPPKGQNQQQLPSTHILR 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9837443 9842485 + Bma006161.1 Bma11g00625 91027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00625 925 PANTHER SERINE-THREONINE PROTEIN KINASE 168 265 - -
Bma11g00625 925 Pfam Protein tyrosine and serine/threonine kinase 639 901 IPR001245 GO:0004672|GO:0006468
Bma11g00625 925 PANTHER SERINE-THREONINE PROTEIN KINASE 614 908 - -
Bma11g00625 925 CDD STKc_MAP3K-like 644 901 - -
Bma11g00625 925 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 614 908 - -
Bma11g00625 925 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 168 265 - -
Bma11g00625 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Bma11g00625 925 SUPERFAMILY CAD & PB1 domains 215 265 - -
Bma11g00625 925 SMART PB1_new 214 276 IPR000270 GO:0005515
Bma11g00625 925 Pfam PB1 domain 219 264 IPR000270 GO:0005515
Bma11g00625 925 PRINTS Tyrosine kinase catalytic domain signature 757 775 IPR001245 GO:0004672|GO:0006468
Bma11g00625 925 PRINTS Tyrosine kinase catalytic domain signature 828 850 IPR001245 GO:0004672|GO:0006468
Bma11g00625 925 PRINTS Tyrosine kinase catalytic domain signature 872 894 IPR001245 GO:0004672|GO:0006468
Bma11g00625 925 PRINTS Tyrosine kinase catalytic domain signature 720 733 IPR001245 GO:0004672|GO:0006468
Bma11g00625 925 SMART serkin_6 638 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma11g00625 925 Gene3D - 220 276 - -
Bma11g00625 925 ProSiteProfiles Protein kinase domain profile. 638 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma11g00625 925 SUPERFAMILY Protein kinase-like (PK-like) 630 900 IPR011009 -
Bma11g00625 925 Gene3D Phosphorylase Kinase; domain 1 631 725 - -
Bma11g00625 925 Gene3D Transferase(Phosphotransferase) domain 1 726 923 - -
Bma11g00625 925 CDD PB1_UP2 203 265 - -
Bma11g00625 925 ProSitePatterns Protein kinases ATP-binding region signature. 644 675 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00625 Bma-Chr11:9837443 Bma12g00582 Bma-Chr12:25424967 4.78E-22 dispersed
Bma11g00625 Bma-Chr11:9837443 Bma01g00365 Bma-Chr1:3011714 1.07E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66788 PF07714 PK_Tyr_Ser-Thr 2.10E-59 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00625 - - pvu:PHAVU_009G209700g 588.186