Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00625 | ATGGCATTTGATCAGAATTTGATTCCCAAAGACTTGCGACCATTAAACGTGGCTAGAACTGGGGTTGAGGAGCCTCGTATTACACCGCCGGCAACTGCCCTTCGAGGTTACAAAGGGCATATTCCGAACGCAGTTTGTGATGTTGTGAGTCATAACTCTGTACCAGTAATCTACCCTGCTATGGTCTCTGATGTAGGATCTACAGCCACGGGGTATGGAAATGTAGTGCAAGGTGTTTCCCCATGGTGCCCTCGTGCCCCTGCTCCTGCCTCATTCGTCCAACCAGCTATGGATCCTTCTCTTAGATTGGCTTACAGTGTAAATCCCAATACTTTTAACCATCTTCGTCCCAATGGTGTCGATGTTGGCAGTGGTGGTTTAAGTTCTAGTCCAAACTTGAGTAATCAAATTGTTGGTAATTGCAACGATGTCCTGGCGAGTGTTGGTTCTAGTTCCAACTGGTGTAACCTGGTCAATGCCTCTGCTGTAGATGAAACTAGTGGTGATTCAATTGGTTCTCTTGGCAATGTAATCAGCCGGGACAGTGGAGCTGATCGGTTGAGTGATGAGGGTGGGGATGGTTCGTTGTCAGGGAAAATGAAGTTTTTGTGCAGTTTTGGTGGCAAGATCTTGCCCAGACCAAGTGACAGAATGCTTAGATACGTGGGAGGACAAACGAGAATAATTAGTGTTAGAAGAGACGTGAGTTTCGATGAGCTTGCTCAAAAGTTTTTAGATGCATATGGGCAGCCAGTAGTTATTAAGTATCAACTCCCCGGAGAAGATCTCGATGCGTTCAATTTTCGTAGCCTACAAGTGGACGATAATTTAAGAGCTCGGCAAATTGGAACTGGAGCATTAGAAGAAAACATTCTTGAACTGGGAGCTGGGGCTCGAACCCATGTCGTTGGACATGTGGATGGTCAAGTTGGTACATCTCCATTGGCGACTGATGCCTGCTCACGAAATCTTAGGGTGAATAATGAAAATGAAAGAATCCCTCCCAACCTCGAAGGTATCATTGGGAGAGCAAGTGAGGGGCAGTCCCCTTATGTGGCATTTGTTGGCAATCCTCCTCAATCCTTTCAAGATGATGTTCTTCAGCCGAATCCGGAGCTACTGCCTTATCCAGTCGGACAGAACACCAGACCTACCACCAATTACGATGATTGTTTAGTCAGAGGTATCACTTCCAAGACTTTTGAGAATGTTATTCAGGGATCTCCAGAAGAATATTCTGATAAACTTCCTGGCCCTCTTGTGAGTGAAGATTATCTGGATGTACCCATTTCTTATGACCGTCTGGGAATAATTGATGATAATGTGAAAATGGAAGATAATTTTCTTTGGAATCCAAAATCAGTTGTAGAGATGGATGTTTGGCTAGATGAGGAAATTAGAAAGCACAAAATGGCTCCGGATACTAATCATAATAGACCACCACTAGGAGCTTTGTCATCAGAATTGATGAACATGGGAAATTTTCAACCAGTCCAGCCTTCTGAGGTTGCAGAATTATCTAGTTTGGATTTCCCGGGACAGCATCCGCAGGCAAATATTGGAATTCATCCGTTGGAGTGTGACACTTTTTTTCATGGACGAAATCCTCAGTTGTTGAGTGTCGGGCTTAACCAACAAAATCATAACATTCCATCGCACTTTCACTCCAAGGTTGCACCCAGTGATGTTGAAGCTGTTGCTTTGATAGGAGATGAACTCCCCTCCAAATTTCCACACAGTAGACATGGAGATGTTCCGGATTCCTCAAATTCACTGTTTAGTGAGAATGATCCTTGGAATTTTAACCACGACGCTCGTTGTCTGCCTCCAACGACACTGCTAGACAAAGCAAATCTTGGTTTCCCAGTTTCTGATGGTTTAGGTCGTTTACAGATGATAAGGAACAGTGACCTCGAGGAGATGAAAGAACTCGGTTCTGGTACCTATGGCACCGTTTATCATGGGAAATGGAGGGGGACAGATGTTGCCATCAAAAGAATTAACGATAGGTGCTTTGCTGGGAAACCTTCAGAAAAGGAACGCTTGAGAGAGGATTTCTGGAATGAAGCAATTAAACTTGCTGACTTGCATCATCCAAACGTGGTAGCTTTCTATGGTGTCGTGCTTGATGGGCCCGGTGGATCTGTGGCAACAGTGACGGAGTATATGGTCAATGGATCGCTAAGAAATGCTTTGCAGAAAAATGAGAAGAGTCTTGACAAGCGCAAACGACTCTTGATTGCAATGGATGCAGCTTTTGGAATGGAATACTTGCATTCAAAGAACATAGTGCATTTTGATTTGAAAAGTGATAACTTATTGGTCAATCTTAGAGACCCTCATCGTCCGATTTGCAAGGTTGGTGATTTGGGTCTATCCAAGGTAAAATGTCAAACGTTGATATCAGGGGGAGTGCGAGGAACACTGCCGTGGATGGCTCCAGAACTTTTGAATGGTAGCAGTAGCCTTGTGTCCGAGAAAGTTGATGTCTTCTCATTCGGGATCGTAATGTGGGAACTTCTTACCGGAGAGGAACCATATGCTGATATGCACTATGGCGCCATAATTGGCGGTATCGTGAGCAACACATTGCGGCCACCTGTGCCAGAATATTGTGATGCAGAATGGAAATTAATGATGGAGAGGTGCTGGTCTACCGAGCAATTTGAGAGGCCGAGTTTCACGGATATTGCCAACGAGTTACGATCAATGGCCGCGAAACTTCCGCCGAAAGGACAGAATCAACAACAACTTCCCTCAACCCATATCCTAAGATGA | 2778 | 44.74 | MAFDQNLIPKDLRPLNVARTGVEEPRITPPATALRGYKGHIPNAVCDVVSHNSVPVIYPAMVSDVGSTATGYGNVVQGVSPWCPRAPAPASFVQPAMDPSLRLAYSVNPNTFNHLRPNGVDVGSGGLSSSPNLSNQIVGNCNDVLASVGSSSNWCNLVNASAVDETSGDSIGSLGNVISRDSGADRLSDEGGDGSLSGKMKFLCSFGGKILPRPSDRMLRYVGGQTRIISVRRDVSFDELAQKFLDAYGQPVVIKYQLPGEDLDAFNFRSLQVDDNLRARQIGTGALEENILELGAGARTHVVGHVDGQVGTSPLATDACSRNLRVNNENERIPPNLEGIIGRASEGQSPYVAFVGNPPQSFQDDVLQPNPELLPYPVGQNTRPTTNYDDCLVRGITSKTFENVIQGSPEEYSDKLPGPLVSEDYLDVPISYDRLGIIDDNVKMEDNFLWNPKSVVEMDVWLDEEIRKHKMAPDTNHNRPPLGALSSELMNMGNFQPVQPSEVAELSSLDFPGQHPQANIGIHPLECDTFFHGRNPQLLSVGLNQQNHNIPSHFHSKVAPSDVEAVALIGDELPSKFPHSRHGDVPDSSNSLFSENDPWNFNHDARCLPPTTLLDKANLGFPVSDGLGRLQMIRNSDLEEMKELGSGTYGTVYHGKWRGTDVAIKRINDRCFAGKPSEKERLREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKNEKSLDKRKRLLIAMDAAFGMEYLHSKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADMHYGAIIGGIVSNTLRPPVPEYCDAEWKLMMERCWSTEQFERPSFTDIANELRSMAAKLPPKGQNQQQLPSTHILR | 925 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9837443 | 9842485 | + | Bma006161.1 | Bma11g00625 | 91027 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00625 | 925 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 168 | 265 | - | - | |
Bma11g00625 | 925 | Pfam | Protein tyrosine and serine/threonine kinase | 639 | 901 | IPR001245 | GO:0004672|GO:0006468 | |
Bma11g00625 | 925 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 614 | 908 | - | - | |
Bma11g00625 | 925 | CDD | STKc_MAP3K-like | 644 | 901 | - | - | |
Bma11g00625 | 925 | PANTHER | KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN | 614 | 908 | - | - | |
Bma11g00625 | 925 | PANTHER | KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN | 168 | 265 | - | - | |
Bma11g00625 | 925 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 763 | 775 | IPR008271 | GO:0004672|GO:0006468 | |
Bma11g00625 | 925 | SUPERFAMILY | CAD & PB1 domains | 215 | 265 | - | - | |
Bma11g00625 | 925 | SMART | PB1_new | 214 | 276 | IPR000270 | GO:0005515 | |
Bma11g00625 | 925 | Pfam | PB1 domain | 219 | 264 | IPR000270 | GO:0005515 | |
Bma11g00625 | 925 | PRINTS | Tyrosine kinase catalytic domain signature | 757 | 775 | IPR001245 | GO:0004672|GO:0006468 | |
Bma11g00625 | 925 | PRINTS | Tyrosine kinase catalytic domain signature | 828 | 850 | IPR001245 | GO:0004672|GO:0006468 | |
Bma11g00625 | 925 | PRINTS | Tyrosine kinase catalytic domain signature | 872 | 894 | IPR001245 | GO:0004672|GO:0006468 | |
Bma11g00625 | 925 | PRINTS | Tyrosine kinase catalytic domain signature | 720 | 733 | IPR001245 | GO:0004672|GO:0006468 | |
Bma11g00625 | 925 | SMART | serkin_6 | 638 | 904 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma11g00625 | 925 | Gene3D | - | 220 | 276 | - | - | |
Bma11g00625 | 925 | ProSiteProfiles | Protein kinase domain profile. | 638 | 905 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma11g00625 | 925 | SUPERFAMILY | Protein kinase-like (PK-like) | 630 | 900 | IPR011009 | - | |
Bma11g00625 | 925 | Gene3D | Phosphorylase Kinase; domain 1 | 631 | 725 | - | - | |
Bma11g00625 | 925 | Gene3D | Transferase(Phosphotransferase) domain 1 | 726 | 923 | - | - | |
Bma11g00625 | 925 | CDD | PB1_UP2 | 203 | 265 | - | - | |
Bma11g00625 | 925 | ProSitePatterns | Protein kinases ATP-binding region signature. | 644 | 675 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma11g00625 | Bma-Chr11:9837443 | Bma12g00582 | Bma-Chr12:25424967 | 4.78E-22 | dispersed | |
Bma11g00625 | Bma-Chr11:9837443 | Bma01g00365 | Bma-Chr1:3011714 | 1.07E-15 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66788 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-59 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00625 | - | - | pvu:PHAVU_009G209700g | 588.186 |