Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00635 ATGGCAAAAGAAGAAGAGAGATCAAGTATGGTTTCAATGGTGGAAGCTTCTGATTCAAGTAGTATCACCTGTCCTTTGCAGGGTGACAAACTGAGAGGACGAGAAAATAAGATCCCAACGAGATTCAAAGGCGTAGTGCCTCAGCCAAATGGGAATTGTGGAGCTCAAATTTACTCCAACCAGAAGCGAATTTGGCTCGGAACTTTCAAATCCGAAAGAGAGGCAGCCATGGCTTATGACAGTGCAGCCATCAAGATGAGAAGTAAGGATTGTCATAGAAACTTCCCTTGGACCAAAATCACAACCGAAGAGGCTCGATTCCAACAAAGTTACTCGACCGAGATCTTGCTCGATATGATCAAAGACGGATCCTACCAATCTCGACTTGAGGAACATCTAACTGCTCATTTGTATATTTTCGAAACAAATTCGAACCTAAAATCGGAGAAGACTCTTACCAAAGACGAATTGTGTCATAAAAAGCTATTCCAAAAGGTGCTAACTCCAAGCGACGTGGGGAAACTTAACCGACTAGTTATCCCGAAGAAATATGCGATCAAGTACTTCCCGAGAATTTCCGAAAGCGGTAAAGGTGGCAACTTCGAGAGCGATGACATGCAGCTTGTATTTTTTGATCGGACGATGCGACAATGGAAGTTTAGATATTGCTACTGGAAGAGCAGCCAGAGTTTCGTTTTCACTAGAGGCTGGAACCGGTTTGTGATGGAAAAGCGTTTGAAGGTCAATGACATTGTCGGTTTCTACTCACGCAAGCCCAGTTACGATGTAGTCGACCGGGGAGAGTTGTTCTTGATCGACATTAATGGTGGCGAGCTAAACGAATTGCGGTTGGAATTGAAGCTTGGATTTGGCCAAGTTTATAAGCAGGAGAAGGATGAGATTCAGCAGCAAGATTCTGCTCAGCTGACCGATGAGCCCGAACAAAAAGGTTTCAAACTTTTTGGCGTTTCGATCAGCCAAAGCCGGGATTGA 993 44.31 MAKEEERSSMVSMVEASDSSSITCPLQGDKLRGRENKIPTRFKGVVPQPNGNCGAQIYSNQKRIWLGTFKSEREAAMAYDSAAIKMRSKDCHRNFPWTKITTEEARFQQSYSTEILLDMIKDGSYQSRLEEHLTAHLYIFETNSNLKSEKTLTKDELCHKKLFQKVLTPSDVGKLNRLVIPKKYAIKYFPRISESGKGGNFESDDMQLVFFDRTMRQWKFRYCYWKSSQSFVFTRGWNRFVMEKRLKVNDIVGFYSRKPSYDVVDRGELFLIDINGGELNELRLELKLGFGQVYKQEKDEIQQQDSAQLTDEPEQKGFKLFGVSISQSRD 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10967369 10968361 + Bma006179.1 Bma11g00635 91037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00635 330 Pfam AP2 domain 42 87 IPR001471 GO:0003700|GO:0006355
Bma11g00635 330 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 10 325 IPR044800 GO:0003700
Bma11g00635 330 PANTHER DNA-BINDING PROTEIN RAV1 10 325 - -
Bma11g00635 330 ProSiteProfiles B3 DNA-binding domain profile. 163 278 IPR003340 GO:0003677
Bma11g00635 330 CDD B3_DNA 161 255 IPR003340 GO:0003677
Bma11g00635 330 SUPERFAMILY DNA-binding domain 41 97 IPR016177 GO:0003677
Bma11g00635 330 SMART rav1_2 41 102 IPR001471 GO:0003700|GO:0006355
Bma11g00635 330 Gene3D - 158 272 IPR015300 -
Bma11g00635 330 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Bma11g00635 330 Pfam B3 DNA binding domain 163 255 IPR003340 GO:0003677
Bma11g00635 330 ProSiteProfiles AP2/ERF domain profile. 41 96 IPR001471 GO:0003700|GO:0006355
Bma11g00635 330 SMART B3_2 163 267 IPR003340 GO:0003677
Bma11g00635 330 Gene3D AP2/ERF domain 40 97 IPR036955 GO:0003700|GO:0006355
Bma11g00635 330 SUPERFAMILY DNA-binding pseudobarrel domain 161 261 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00635 Bma-Chr11:10967369 Bma15g00077 Bma-Chr15:893677 8.31E-53 dispersed
Bma11g00635 Bma-Chr11:10967369 Bma01g00157 Bma-Chr1:1471963 1.09E-53 transposed
Bma11g00635 Bma-Chr11:10967369 Bma14g01697 Bma-Chr14:36122169 2.71E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58054 PF02362 B3 1.10E-23 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00635 K09287 - csv:101212246 326.635