Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00635 | ATGGCAAAAGAAGAAGAGAGATCAAGTATGGTTTCAATGGTGGAAGCTTCTGATTCAAGTAGTATCACCTGTCCTTTGCAGGGTGACAAACTGAGAGGACGAGAAAATAAGATCCCAACGAGATTCAAAGGCGTAGTGCCTCAGCCAAATGGGAATTGTGGAGCTCAAATTTACTCCAACCAGAAGCGAATTTGGCTCGGAACTTTCAAATCCGAAAGAGAGGCAGCCATGGCTTATGACAGTGCAGCCATCAAGATGAGAAGTAAGGATTGTCATAGAAACTTCCCTTGGACCAAAATCACAACCGAAGAGGCTCGATTCCAACAAAGTTACTCGACCGAGATCTTGCTCGATATGATCAAAGACGGATCCTACCAATCTCGACTTGAGGAACATCTAACTGCTCATTTGTATATTTTCGAAACAAATTCGAACCTAAAATCGGAGAAGACTCTTACCAAAGACGAATTGTGTCATAAAAAGCTATTCCAAAAGGTGCTAACTCCAAGCGACGTGGGGAAACTTAACCGACTAGTTATCCCGAAGAAATATGCGATCAAGTACTTCCCGAGAATTTCCGAAAGCGGTAAAGGTGGCAACTTCGAGAGCGATGACATGCAGCTTGTATTTTTTGATCGGACGATGCGACAATGGAAGTTTAGATATTGCTACTGGAAGAGCAGCCAGAGTTTCGTTTTCACTAGAGGCTGGAACCGGTTTGTGATGGAAAAGCGTTTGAAGGTCAATGACATTGTCGGTTTCTACTCACGCAAGCCCAGTTACGATGTAGTCGACCGGGGAGAGTTGTTCTTGATCGACATTAATGGTGGCGAGCTAAACGAATTGCGGTTGGAATTGAAGCTTGGATTTGGCCAAGTTTATAAGCAGGAGAAGGATGAGATTCAGCAGCAAGATTCTGCTCAGCTGACCGATGAGCCCGAACAAAAAGGTTTCAAACTTTTTGGCGTTTCGATCAGCCAAAGCCGGGATTGA | 993 | 44.31 | MAKEEERSSMVSMVEASDSSSITCPLQGDKLRGRENKIPTRFKGVVPQPNGNCGAQIYSNQKRIWLGTFKSEREAAMAYDSAAIKMRSKDCHRNFPWTKITTEEARFQQSYSTEILLDMIKDGSYQSRLEEHLTAHLYIFETNSNLKSEKTLTKDELCHKKLFQKVLTPSDVGKLNRLVIPKKYAIKYFPRISESGKGGNFESDDMQLVFFDRTMRQWKFRYCYWKSSQSFVFTRGWNRFVMEKRLKVNDIVGFYSRKPSYDVVDRGELFLIDINGGELNELRLELKLGFGQVYKQEKDEIQQQDSAQLTDEPEQKGFKLFGVSISQSRD | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10967369 | 10968361 | + | Bma006179.1 | Bma11g00635 | 91037 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00635 | 330 | Pfam | AP2 domain | 42 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Bma11g00635 | 330 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 10 | 325 | IPR044800 | GO:0003700 | |
Bma11g00635 | 330 | PANTHER | DNA-BINDING PROTEIN RAV1 | 10 | 325 | - | - | |
Bma11g00635 | 330 | ProSiteProfiles | B3 DNA-binding domain profile. | 163 | 278 | IPR003340 | GO:0003677 | |
Bma11g00635 | 330 | CDD | B3_DNA | 161 | 255 | IPR003340 | GO:0003677 | |
Bma11g00635 | 330 | SUPERFAMILY | DNA-binding domain | 41 | 97 | IPR016177 | GO:0003677 | |
Bma11g00635 | 330 | SMART | rav1_2 | 41 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Bma11g00635 | 330 | Gene3D | - | 158 | 272 | IPR015300 | - | |
Bma11g00635 | 330 | CDD | AP2 | 40 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Bma11g00635 | 330 | Pfam | B3 DNA binding domain | 163 | 255 | IPR003340 | GO:0003677 | |
Bma11g00635 | 330 | ProSiteProfiles | AP2/ERF domain profile. | 41 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Bma11g00635 | 330 | SMART | B3_2 | 163 | 267 | IPR003340 | GO:0003677 | |
Bma11g00635 | 330 | Gene3D | AP2/ERF domain | 40 | 97 | IPR036955 | GO:0003700|GO:0006355 | |
Bma11g00635 | 330 | SUPERFAMILY | DNA-binding pseudobarrel domain | 161 | 261 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma11g00635 | Bma-Chr11:10967369 | Bma15g00077 | Bma-Chr15:893677 | 8.31E-53 | dispersed | |
Bma11g00635 | Bma-Chr11:10967369 | Bma01g00157 | Bma-Chr1:1471963 | 1.09E-53 | transposed | |
Bma11g00635 | Bma-Chr11:10967369 | Bma14g01697 | Bma-Chr14:36122169 | 2.71E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58054 | PF02362 | B3 | 1.10E-23 | CL0405 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00635 | K09287 | - | csv:101212246 | 326.635 |