Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00643 ATGCTGAACTGTGGATTTGGCAGTGATGGATTCAACCGCACTGCCCATGGAAGTGATAAAACATCTAGATCTTTTAAGAGGAGAGTGAGAAAAGGGTCTGAGGGACTTAAGTCAATTGGCCGCTCTATTGGATTAGGAGTGTCACGGGCAGTATTTCCAGAAGATCTAAAAGTTTCAGAGAAGAAGATATTTGATCCTCAAGATAAATTCCTCTTGTTTTGCAATAAACTTTTTGTCATATCATGTATTTTGGCAGTGTCTGTGGACCCTCTGTTTTATTATCTTCCAGTCATCAATGAACATTCAAATTGTCTTGGCATCGATAAAAAGCTTGCACTAACCGTGACAACACTGAGGACTATTATTGATGTGTTCTATCTCATTCATATGGCTCTCCAGTTCCGAACGGCTTACATTGCTCCATCATCTCGGGTTTTCGGAAGAGGGGAGCTTGTGATAGATTCTGCAAAAATTGCAAAACGGTACTTGCGACTGTATTTTATGATCGATTTCCTCTCAGTACTGCCCCTGCCACAGATTGTGGTCTGGAGATTTCTTGATAGCTCAAATGGTTCCAGTGTATTTTCTACTAAGCAGGCATTACTTTTCATAGTTTTGTTTCAATACATCCCAAGATTCCTCCGTATATTACCCTTAACATCAGAATTAAAAAGGACAGCTGGTGTATTTGCTGAAACTGCTTGGGCTGGTGCTGTTTATTATCTTCTATTATATATGCTCGCTAGTCATATAGTTGGAGCCTTCTGGTATTTAATGGCTGTGGAACGAAATGATACATGCTGGCAAGGAGCTTGCAAGGGAAACTGCAAAAAGGAGTTTTTGTACTGCGGTAATCAACAAATGGAAGGTTTTGATGCTTGGAATACTACAGGTGTAGCTTTTCTCCACTCAAATTGCACCATCGACACCATCGATGGCAACAAACCACCATTTGATTTTGGAATCTTCCAACAAGCTTTGGAATCTGGTATTGTATCTTCCATGAAATTCGTCACTAAATACTGTTACTGTTTATGGTGGGGACTGCAAAATTTAAGAAGAAAAAAACCTTTTCCTAATATTCCTACTATTTTTACTGATTGTGCCCATTTTTCTATTTGTGGTCAAACTGATCACTTGATTGCACGATCTTTGCATAAGTTCAAATCTCTGAGCGACTATTTTGTCGGTTTTTTCAGTACTCTCGGGCAGGGTCTTAAAACCAGCACCTATCCTGGGGAAGTGATTTTCTCCATTGCGCTGGCCGTGCTTGGGCTCATTCTTTTTGCTCTTCTTATTGGCAACATGCAGACCTATCTTCAATCTCTTACCATACGGCTTGAGGAGATGAGGATCAAAAGGCGTGACTCCGAACAGTGGATGCACCATCGTTTGCTTCCACAGGAACTTAGGGAGCGAGTTAGACGCTATGATCAATATAAGTGGCTGGAAACTCGTGGTGTAGATGAACAGAGTTTGGTTCACAGTCTACCGAAGGATCTTCGGAGAGATATTAAGCGGCACCTCTGCCTTGCGTTAGTGAGAAGGGTTCCTCTGTTTGAGAGCATGGATGAGAGGCTATTGGATGCCATTTGTGAGCGGCTGAAACCATGTTTATTCACCGAGAGCACATACATCGTGCGTGAAGGAGATCCAGTCGATGAAATGCTCCTCATCATACGTGGTCGCCTCGAGAGTGAAACCACCGACGGAGGACGAAGTGGCTTTTTCAACCGAAGTTTTCTCAAACAAGGTGATTTCTGTGGAGAGGAGCTTCTGACATGGGCCTTAGACCCCAAATCTGGGGTGAATCTCCCTTCCTCAACCAGGACAGTCAAGGCAATAACGGAGGTCGAGGCCTTTGCTCTAACAGCTGAAGACTTGAAATTTGTGGCAAGCCAGTTCAGGAGGCTTCACAGTCGACAGGTTCAACACACTTTCCGTTTTTACTCTCAGCAGTGGCGAACTTGGGCTGCTTCCTTTATACAAGCAGCTTGGCGTCGCCATTTGAAGAGGAAGACCATGGAGCTTCGCCGGAAGGAGGAAGAAGAAGAAGAAGAAGAGGAAGATGGGTACGAGACTGTCGGCCAAAATGTAGCCGGAGGTACGTATAGTCTTGGTGCCACTTTCTTAGCTTCTAAATTTGCTGCAAATGCTCTTCGCGGTGTTCATCGATACAGGCTAGCCAAAACTGCTACCGATTTGGTGAAACTACAGAAGCCTCCTGAACCAGATTTTACGGCTGATGATGCCGACTGA 2259 43.78 MLNCGFGSDGFNRTAHGSDKTSRSFKRRVRKGSEGLKSIGRSIGLGVSRAVFPEDLKVSEKKIFDPQDKFLLFCNKLFVISCILAVSVDPLFYYLPVINEHSNCLGIDKKLALTVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDSAKIAKRYLRLYFMIDFLSVLPLPQIVVWRFLDSSNGSSVFSTKQALLFIVLFQYIPRFLRILPLTSELKRTAGVFAETAWAGAVYYLLLYMLASHIVGAFWYLMAVERNDTCWQGACKGNCKKEFLYCGNQQMEGFDAWNTTGVAFLHSNCTIDTIDGNKPPFDFGIFQQALESGIVSSMKFVTKYCYCLWWGLQNLRRKKPFPNIPTIFTDCAHFSICGQTDHLIARSLHKFKSLSDYFVGFFSTLGQGLKTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVHSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLLIIRGRLESETTDGGRSGFFNRSFLKQGDFCGEELLTWALDPKSGVNLPSSTRTVKAITEVEAFALTAEDLKFVASQFRRLHSRQVQHTFRFYSQQWRTWAASFIQAAWRRHLKRKTMELRRKEEEEEEEEEDGYETVGQNVAGGTYSLGATFLASKFAANALRGVHRYRLAKTATDLVKLQKPPEPDFTADDAD 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11110782 11115830 - Bma006191.2 Bma11g00643 91045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00643 752 Pfam Cyclic nucleotide-binding domain 541 630 IPR000595 -
Bma11g00643 752 SUPERFAMILY cAMP-binding domain-like 449 639 IPR018490 -
Bma11g00643 752 Gene3D - 76 444 - -
Bma11g00643 752 CDD CAP_ED 519 650 IPR000595 -
Bma11g00643 752 SUPERFAMILY Voltage-gated potassium channels 66 441 - -
Bma11g00643 752 Pfam Ion transport protein 75 445 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma11g00643 752 ProSiteProfiles IQ motif profile. 655 684 IPR000048 GO:0005515
Bma11g00643 752 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 398 749 - -
Bma11g00643 752 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 353 - -
Bma11g00643 752 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 398 749 - -
Bma11g00643 752 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 8 353 - -
Bma11g00643 752 ProSiteProfiles cAMP/cGMP binding motif profile. 519 649 IPR000595 -
Bma11g00643 752 Gene3D Helix hairpin bin 447 510 - -
Bma11g00643 752 SMART cnmp_10 519 650 IPR000595 -
Bma11g00643 752 Coils Coil 667 690 - -
Bma11g00643 752 Gene3D Jelly Rolls 517 637 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00643 Bma-Chr11:11110782 Bma11g00665 Bma-Chr11:12624647 0 dispersed
Bma14g01461 Bma-Chr14:28213055 Bma11g00643 Bma-Chr11:11110782 8.55E-74 dispersed
Bma11g00643 Bma-Chr11:11110782 Bma08g00382 Bma-Chr8:8627202 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00643 K05391 - csv:101219180 1135.17