Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00703 ATGGATAATATTGGAGGTGATCTCAATAACTACTGGGATGACGATACCTTTCTAACAGCCGAAGAGATTGACAGCTGGGGATTGGACGAGACTTTATCGAGTAATTATGATTCTAGCTCACCGGATGGTTCTGCGTTGAAAAATGTAGTTTCGGAGAGGAATAGGAGGAAGAAGCTAAACGAAAAACTGTACGCACTCAGAGCTATAGTTCCTAACATTACTAAGATGGACAAGGCGTCGATAATCAAAGACGCCATAGACTACATCCAAGAGCTTCAAGAGCAAGAAAGAATACTCCAAGGGGAAATAGAAGAGTTAGAGAGCGAAACGGTGTTGAAAGACGATGGAGGTTTCGGCTTCAAGAGAGATCTACCGATTCTACTCCGATCAAAGAAAAGGAAGACGGAACAGCTCAGTGATCCTGGAGGATCTGTAACTTCTCCCATTGAAGTCCTTGACCTGACTGTTACATTCATGGGAGAGAAAACAATGGCGGTGAGCTTGACGTGCACGAAGAGCAGGGAAACAATGGTGAAACTGTGTGAGGTGTTTGAAACGATAAAGCTGAAACTCATCTCTGCTAGCATCATTGAGGTGTCTGGAAGAGTTATCAAGACCCTTTTCATTGAGGCAGAGGAAGAAGAGAAAGATGTTATAAAGCTACAAATAGAGACGGCCATTGCAGTTTTCAATAGCCCACAGAGCCAATAA 711 43.32 MDNIGGDLNNYWDDDTFLTAEEIDSWGLDETLSSNYDSSSPDGSALKNVVSERNRRKKLNEKLYALRAIVPNITKMDKASIIKDAIDYIQELQEQERILQGEIEELESETVLKDDGGFGFKRDLPILLRSKKRKTEQLSDPGGSVTSPIEVLDLTVTFMGEKTMAVSLTCTKSRETMVKLCEVFETIKLKLISASIIEVSGRVIKTLFIEAEEEEKDVIKLQIETAIAVFNSPQSQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16745683 16747426 - Bma006295.1 Bma11g00703 91105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00703 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Bma11g00703 236 Coils Coil 89 109 - -
Bma11g00703 236 Coils Coil 204 224 - -
Bma11g00703 236 Pfam Helix-loop-helix DNA-binding domain 51 93 IPR011598 GO:0046983
Bma11g00703 236 PANTHER TRANSCRIPTION FACTOR BHLH35 6 232 - -
Bma11g00703 236 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 232 - -
Bma11g00703 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 109 IPR036638 GO:0046983
Bma11g00703 236 SMART finulus 49 98 IPR011598 GO:0046983
Bma11g00703 236 Gene3D - 41 110 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g01028 Bma11g00703 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01028 Bma-Chr6:46986271 Bma11g00703 Bma-Chr11:16745683 5.20E-61 dispersed
Bma07g00170 Bma-Chr7:2274279 Bma11g00703 Bma-Chr11:16745683 1.07E-18 dispersed
Bma07g01474 Bma-Chr7:50374715 Bma11g00703 Bma-Chr11:16745683 7.83E-18 dispersed
Bma11g00703 Bma-Chr11:16745683 Bma14g00153 Bma-Chr14:2131378 3.99E-20 dispersed
Bma14g01796 Bma-Chr14:38542509 Bma11g00703 Bma-Chr11:16745683 9.43E-14 dispersed
Bma11g00703 Bma-Chr11:16745683 Bma11g00704 Bma-Chr11:16988076 8.79E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58058 PF00010 HLH 1.80E-11 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00703 - - jre:109003087 282.722