Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00704 GGCGATTGCAGCTGGGGATTGGACGAAACTTTATCGAGTTATGATGATTCTAGCTCACCGGATGGTTCTGCGTCGAGAAACATAGTTACGGAGAGGAATAGGAGGAAGAAGCTAAACGAAAGACTGTTCGCACTCAGAGCTGTAGTTCCTAACATTACAAAGATGGATAAGGCATCGATAATCAAAGACGCCATAGACTACATCCAAGAGCTTCAAGAGCGAGAAATAACACTCCAAGCGGAAATAGAAGAGTTAGAGAGCGGAACGGTGTTGAAAGACGTTGGAGGGTTTGACTTGGAGCGAGATCTACCAAATTTACTCCGATCAAAGAAAAGGAAGTCGGAACAGCACTGTGATCCTGTAGGATCTGGAACTTCTCCCATTGAAGTCCTCGATCTGAGTGTTACATTCATGGGAGAGAAAACAGTGGTGGTGAGCTTGACGTGCACGAAGAGAACGGAAACAATGGTGAAACTGTGTGAGGTGTTTGAAACGATGAACCTGAAAGTCATCACTGCTAGCATCATTGCGGTGTCTGGAAAACTTACCAAGACCCTTTTCATCGAGGCAGAGGAAGAAGAGAAAGATGTTATAAAGCTACAAATAGAGACGGCCATTGCAGTTCTCAATGGCCCACACAGTCCAATGAGCATCTGA 657 45.21 GDCSWGLDETLSSYDDSSSPDGSASRNIVTERNRRKKLNERLFALRAVVPNITKMDKASIIKDAIDYIQELQEREITLQAEIEELESGTVLKDVGGFDLERDLPNLLRSKKRKSEQHCDPVGSGTSPIEVLDLSVTFMGEKTVVVSLTCTKRTETMVKLCEVFETMNLKVITASIIAVSGKLTKTLFIEAEEEEKDVIKLQIETAIAVLNGPHSPMSI 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16988076 16990094 + Bma006302.1 Bma11g00704 91106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00704 218 Gene3D - 16 88 IPR036638 GO:0046983
Bma11g00704 218 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 212 - -
Bma11g00704 218 MobiDBLite consensus disorder prediction 1 31 - -
Bma11g00704 218 MobiDBLite consensus disorder prediction 10 27 - -
Bma11g00704 218 PANTHER TRANSCRIPTION FACTOR BHLH35 3 212 - -
Bma11g00704 218 SMART finulus 28 77 IPR011598 GO:0046983
Bma11g00704 218 Coils Coil 68 88 - -
Bma11g00704 218 Pfam Helix-loop-helix DNA-binding domain 28 72 IPR011598 GO:0046983
Bma11g00704 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 88 IPR036638 GO:0046983
Bma11g00704 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 71 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00704 Bma-Chr11:16988076 Bma14g00153 Bma-Chr14:2131378 2.30E-19 dispersed
Bma11g00703 Bma-Chr11:16745683 Bma11g00704 Bma-Chr11:16988076 8.79E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58059 PF00010 HLH 2.20E-12 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00704 - - jre:109003087 283.493