Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00817 | ATGACGAGCTGCGTCGATGTTGTTGCACCTGACCAACTCTGCTACATCCCCTGCAACTTTTGCAATATCGTTCTTGCGGTGAGTGTTCCATGCAACAATTTATTTGACATTGTAACAGTACGATGTGGACACTGCACCAATCTGTGGTCCGTGAACATGGCTGCAGCATTTCAGGCACTGTCATGGCAAGATTTACAGGCACCAAAGCTCAACCTATACACTGCCCCAGACCAGCACAAGATTGATTCAGCATCGACGTCAATTTTCGCTAACAAGGTGGCAAAACGACCTCCAATTTCAAATCCCACCAAAGAAATGATGGTGACTCAAGCTCCTGAGAAGAGGCAGCGAGTACCTTCTGCATACAATCAGTTCATAAAAGAGGAAATACAAAGGATTAAGACTAATAATCCAGATATTAGTCACAGGGAAGCATTCAGCACTGCTGCAAAAAATTGGGCGCACTTCCCACGTATTCATTTCGGCCTAATGCTGGACACAAACAACCAACCAAAGCTGGACAATGTAAGAACTTTAAAGGGCCCTTAG | 549 | 44.99 | MTSCVDVVAPDQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDLQAPKLNLYTAPDQHKIDSASTSIFANKVAKRPPISNPTKEMMVTQAPEKRQRVPSAYNQFIKEEIQRIKTNNPDISHREAFSTAAKNWAHFPRIHFGLMLDTNNQPKLDNVRTLKGP | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25431353 | 25435103 | - | Bma006468.2 | Bma11g00817 | 91219 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00817 | 182 | Pfam | YABBY protein | 9 | 163 | IPR006780 | GO:0007275 | |
Bma11g00817 | 182 | Gene3D | High mobility group box domain | 100 | 158 | IPR036910 | - | |
Bma11g00817 | 182 | PANTHER | AXIAL REGULATOR YABBY 5 | 1 | 176 | - | - | |
Bma11g00817 | 182 | SUPERFAMILY | HMG-box | 101 | 156 | IPR036910 | - | |
Bma11g00817 | 182 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 176 | IPR006780 | GO:0007275 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g00968 | Bma-Chr6:46190174 | Bma11g00817 | Bma-Chr11:25431353 | 1.34E-78 | dispersed | |
Bma07g00218 | Bma-Chr7:2604726 | Bma11g00817 | Bma-Chr11:25431353 | 5.61E-60 | dispersed | |
Bma11g00256 | Bma-Chr11:2247422 | Bma11g00817 | Bma-Chr11:25431353 | 6.20E-61 | dispersed | |
Bma11g00817 | Bma-Chr11:25431353 | Bma12g00169 | Bma-Chr12:2310453 | 5.92E-49 | dispersed | |
Bma11g00817 | Bma-Chr11:25431353 | Bma01g00320 | Bma-Chr1:2644910 | 2.98E-95 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58062 | PF04690 | YABBY | 3.10E-67 | CL0114 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00817 | K25796 | - | vvi:100254328 | 276.174 |