Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00817 ATGACGAGCTGCGTCGATGTTGTTGCACCTGACCAACTCTGCTACATCCCCTGCAACTTTTGCAATATCGTTCTTGCGGTGAGTGTTCCATGCAACAATTTATTTGACATTGTAACAGTACGATGTGGACACTGCACCAATCTGTGGTCCGTGAACATGGCTGCAGCATTTCAGGCACTGTCATGGCAAGATTTACAGGCACCAAAGCTCAACCTATACACTGCCCCAGACCAGCACAAGATTGATTCAGCATCGACGTCAATTTTCGCTAACAAGGTGGCAAAACGACCTCCAATTTCAAATCCCACCAAAGAAATGATGGTGACTCAAGCTCCTGAGAAGAGGCAGCGAGTACCTTCTGCATACAATCAGTTCATAAAAGAGGAAATACAAAGGATTAAGACTAATAATCCAGATATTAGTCACAGGGAAGCATTCAGCACTGCTGCAAAAAATTGGGCGCACTTCCCACGTATTCATTTCGGCCTAATGCTGGACACAAACAACCAACCAAAGCTGGACAATGTAAGAACTTTAAAGGGCCCTTAG 549 44.99 MTSCVDVVAPDQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDLQAPKLNLYTAPDQHKIDSASTSIFANKVAKRPPISNPTKEMMVTQAPEKRQRVPSAYNQFIKEEIQRIKTNNPDISHREAFSTAAKNWAHFPRIHFGLMLDTNNQPKLDNVRTLKGP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25431353 25435103 - Bma006468.2 Bma11g00817 91219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00817 182 Pfam YABBY protein 9 163 IPR006780 GO:0007275
Bma11g00817 182 Gene3D High mobility group box domain 100 158 IPR036910 -
Bma11g00817 182 PANTHER AXIAL REGULATOR YABBY 5 1 176 - -
Bma11g00817 182 SUPERFAMILY HMG-box 101 156 IPR036910 -
Bma11g00817 182 PANTHER PROTEIN YABBY 6-RELATED 1 176 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00968 Bma-Chr6:46190174 Bma11g00817 Bma-Chr11:25431353 1.34E-78 dispersed
Bma07g00218 Bma-Chr7:2604726 Bma11g00817 Bma-Chr11:25431353 5.61E-60 dispersed
Bma11g00256 Bma-Chr11:2247422 Bma11g00817 Bma-Chr11:25431353 6.20E-61 dispersed
Bma11g00817 Bma-Chr11:25431353 Bma12g00169 Bma-Chr12:2310453 5.92E-49 dispersed
Bma11g00817 Bma-Chr11:25431353 Bma01g00320 Bma-Chr1:2644910 2.98E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58062 PF04690 YABBY 3.10E-67 CL0114 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00817 K25796 - vvi:100254328 276.174