Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00817 ATGACGAGCTGCGTCGATGTTGTTGCACCTGACCAACTCTGCTACATCCCCTGCAACTTTTGCAATATCGTTCTTGCGGTGAGTGTTCCATGCAACAATTTATTTGACATTGTAACAGTACGATGTGGACACTGCACCAATCTGTGGTCCGTGAACATGGCTGCAGCATTTCAGGCACTGTCATGGCAAGATTTACAGGCACCAAAGCTCAACCTATACACTGCCCCAGACCAGCACAAGATTGATTCAGCATCGACGTCAATTTTCGCTAACAAGGTGGCAAAACGACCTCCAATTTCAAATCCCACCAAAGAAATGATGGTGACTCAAGCTCCTGAGAAGAGGCAGCGAGTACCTTCTGCATACAATCAGTTCATAAAAGAGGAAATACAAAGGATTAAGACTAATAATCCAGATATTAGTCACAGGGAAGCATTCAGCACTGCTGCAAAAAATTGGGCGCACTTCCCACGTATTCATTTCGGCCTAATGCTGGACACAAACAACCAACCAAAGCTGGACAATGTAAGAACTTTAAAGGGCCCTTAG 549 44.99 MTSCVDVVAPDQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDLQAPKLNLYTAPDQHKIDSASTSIFANKVAKRPPISNPTKEMMVTQAPEKRQRVPSAYNQFIKEEIQRIKTNNPDISHREAFSTAAKNWAHFPRIHFGLMLDTNNQPKLDNVRTLKGP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25431353 25435103 - Bma006468.2 Bma11g00817 91219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00817 182 Pfam YABBY protein 9 163 IPR006780 GO:0007275
Bma11g00817 182 Gene3D High mobility group box domain 100 158 IPR036910 -
Bma11g00817 182 PANTHER AXIAL REGULATOR YABBY 5 1 176 - -
Bma11g00817 182 SUPERFAMILY HMG-box 101 156 IPR036910 -
Bma11g00817 182 PANTHER PROTEIN YABBY 6-RELATED 1 176 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00817 K25796 YAB; plant-specific transcription factor YABBY family protein - vvi:100254328 276.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00968 Bma-Chr6:46190174 Bma11g00817 Bma-Chr11:25431353 1.34E-78 dispersed
Bma07g00218 Bma-Chr7:2604726 Bma11g00817 Bma-Chr11:25431353 5.61E-60 dispersed
Bma11g00256 Bma-Chr11:2247422 Bma11g00817 Bma-Chr11:25431353 6.20E-61 dispersed
Bma11g00817 Bma-Chr11:25431353 Bma12g00169 Bma-Chr12:2310453 5.92E-49 dispersed
Bma11g00817 Bma-Chr11:25431353 Bma01g00320 Bma-Chr1:2644910 2.98E-95 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00744 CCT,ECH 1 162 C2C2-YABBY Transcription Factor Family AT1G69180 56.7 5.5e-45 177.6
Bma14g00033 . 62 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 2.9e-40 161.8
Bma07g00218 . 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 62.7 7.6e-58 220.3
Bma11g00256 . 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 57.8 1.2e-55 213.0
Bma14g00033 . 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 56.3 9.0e-43 170.2
Bma12g00169 . 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 3.8e-41 164.9
Bma01g00320 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.5e-40 162.2
Bma11g00817 . 11 172 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 4.2e-40 161.4
Bma14g00033 . 29 211 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 1.2e-46 183.3
Bma12g00169 . 29 194 C2C2-YABBY Transcription Factor Family AT4G00180 50.5 5.2e-39 157.9
Bma01g00320 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.4 9.7e-65 243.0
Bma11g00817 . 7 173 C2C2-YABBY Transcription Factor Family AT2G26580 66.5 4.4e-57 217.6
Bma06g00968 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 66.5 2.7e-54 208.4
Bma11g00256 . 1 164 C2C2-YABBY Transcription Factor Family AT2G26580 59.1 8.3e-48 186.8
Bma07g00218 . 6 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.3 6.6e-45 177.2
Bma14g00033 . 19 177 C2C2-YABBY Transcription Factor Family AT2G26580 55.3 4.4e-41 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58062 PF04690 YABBY 3.10E-67 CL0114 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma11g00817 Bma_Chr11 FPKM 10.670749 11.287056 17.289141 16.349293 19.206793 17.493633 20.5396 18.183836 19.138714 21.545252