Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00823 ATGAAGGATAACGAGTATGAGGAAGAGTTCGTCGACTACAAGGAAGAAGAAGACAGCGTCCTCGACTCTGATGGAGCTAAACTCAATGGCGAAATGGGCAAGAAGGGCTATGTTAGGATTCATAGTTCAGGATTTAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGTGCTATTGTGGATTGTGGATTTGAGCATCCTTCTGAAGGCAATTTCCTACTTTTTTCTGCGAGACTAGAGTTTTTATCCACCATTCAACACGAATGTATTCCTCAAGCCATCCTGGGCATGGATGTTATTTGTCAAGCAAAATCTGGAATGGGCAAAACTGCTGTTTTTGTTCTTTCATCTCTGCAACAAATTGATCCTGTACCAGGTCAAGTGTCTGCGCTTGTTTTGTGTCATACAAGGGAGTTGGCATATACTCGTCATGAGTTTGAAAGGTTCAGCACGTACCTGGTTGATCTTAGGGTTGCTATCTTCTACGGTGACGTCAGTATCAAAATTCACAAGGATTTACTAAAGAATGAATGCCCACATATTGTCGTTGGAACACCAGGAAGAATATTGGCACTAGCAAGAGATAAGGATCTTTCTTTAAAGAATGTTAGGCATTTTATCCTGGATGAGTGTGACAAAATGCTTGAGTCCCTTGACATGAAAAGAGATGTTCAGGAAATGTTTAAGATGACTCCTCATGATAAACAAGTAATGATGTTTTCTACCACCCTCAGCAAAGAGATCCGTCCAGTTTATCAAAAGTTTATGCAAGATCCAATGGAAATTTATGTTGACGATGAGGCAAAGTTGACCTTGCATGGTCTTCACTACATCAAATTAATGGAGTCGGAGAAAAATCGCAAGTTGGATGATCTCCTTGATGCATTGGACTTTAATCAAGTCGTTATTTTTGTCAAAAGTTTAAGTAGAGCTGCCGAGCTGGATAAATTGCTTGTGGAGTGTAATTTCCCTTCTGTATGCAAGAGGATTCTTGTTGCCACAGATTTGGTTGGTAGAGGTATTGATATTGAGCGTGCCAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACTTACCTGCAATTGCATAGGGTTGGGAGGGCGTGTAGGTTTGGTACCAAAGGCCTAGCGATAACATTCGTTTCATCTGCTGTTGATTCTGCTATTCTCAATGATGTAAGGCAATGTTGGTATTCGGACGGTCCCTTTATAATTCACTGGGTGATACTTAAAACTTTTTATTTCATAAAATAG 1257 40.33 MKDNEYEEEFVDYKEEEDSVLDSDGAKLNGEMGKKGYVRIHSSGFRDFLLKPELLRAIVDCGFEHPSEGNFLLFSARLEFLSTIQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYTRHEFERFSTYLVDLRVAIFYGDVSIKIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMKRDVQEMFKMTPHDKQVMMFSTTLSKEIRPVYQKFMQDPMEIYVDDEAKLTLHGLHYIKLMESEKNRKLDDLLDALDFNQVVIFVKSLSRAAELDKLLVECNFPSVCKRILVATDLVGRGIDIERANIVINYDMPDSADTYLQLHRVGRACRFGTKGLAITFVSSAVDSAILNDVRQCWYSDGPFIIHWVILKTFYFIK 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25648476 25656312 - Bma006476.1 Bma11g00823 91225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00823 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 264 IPR027417 -
Bma11g00823 418 SMART ultradead3 77 277 IPR014001 -
Bma11g00823 418 Gene3D - 326 400 IPR027417 -
Bma11g00823 418 Gene3D - 38 269 IPR027417 -
Bma11g00823 418 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 326 - -
Bma11g00823 418 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 327 397 - -
Bma11g00823 418 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 410 IPR001650 -
Bma11g00823 418 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 26 326 - -
Bma11g00823 418 CDD DEADc_DDX39 42 263 - -
Bma11g00823 418 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 327 397 - -
Bma11g00823 418 SMART helicmild6 286 373 IPR001650 -
Bma11g00823 418 Pfam Helicase conserved C-terminal domain 315 373 IPR001650 -
Bma11g00823 418 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 261 IPR014001 -
Bma11g00823 418 Pfam DEAD/DEAH box helicase 83 247 IPR011545 GO:0003676|GO:0005524
Bma11g00823 418 CDD SF2_C_DEAD 275 382 - -
Bma11g00823 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 391 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01278 Bma-Chr1:17309342 Bma11g00823 Bma-Chr11:25648476 2.76E-30 dispersed
Bma01g01279 Bma-Chr1:17310403 Bma11g00823 Bma-Chr11:25648476 0 dispersed
Bma04g00065 Bma-Chr4:587252 Bma11g00823 Bma-Chr11:25648476 6.02E-45 dispersed
Bma11g00823 Bma-Chr11:25648476 Bma02g01063 Bma-Chr2:52225895 8.44E-56 dispersed
Bma11g00823 Bma-Chr11:25648476 Bma02g00027 Bma-Chr2:313407 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00823 K12812 - csv:101217346 628.246