Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00863 ATGGTACATCCTTCATCTTCGCACTGCCTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGGTGAAGTCGAAGAAGTTCAGAGGTGTCAGGCAGAGACATTGGGGATCATGGGTATCGGAGATTCGCCACCCATTACTAAAGAGAAGAATCTGGCTAGGAACATTTGATACAGCCGAAGAGGCAGCCAAAGCATACGACCACGCCGCCATCTTAATGAGCGGCCAGAATGCCAAAACTAATTTTCCTGCGGCTTCCCTCAGAGACTCGAAGACCAGTGTGGATTCGCCGTCTTCACCTGAAAATTTATCAGAAATTCTCCATGCCAAGCTAAGAAAGTGCGGCAAATCTCCTTCGCCTTCAATGACCTGCTTGAGACTCGACGCACAGAATTCTTATATCGGCGTTTGGCAAAAGCGTGCGGGTCAAAGCTCCGATTCCAACTGGGTCATGACATTTCAGCTAGGGAATGAGAAGAAAAATTGTCATGAGATTTCGCATTCTTCCCCTTCATCTTTCAGGCAAGCTCAGCTTCCGCCATCGGAAGCACCTGAAGTCGTTCCCGCTCAGATCAATGAAGAAGAGGCACTGGCACTGCAAATGATAGAGGAACTGCTTTCTATTAACGAGGATGAGAAATTGTACCATTAG 660 47.73 MVHPSSSHCLFSLSLSLSLSLSLMVKSKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFDTAEEAAKAYDHAAILMSGQNAKTNFPAASLRDSKTSVDSPSSPENLSEILHAKLRKCGKSPSPSMTCLRLDAQNSYIGVWQKRAGQSSDSNWVMTFQLGNEKKNCHEISHSSPSSFRQAQLPPSEAPEVVPAQINEEEALALQMIEELLSINEDEKLYH 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31135087 31135880 + Bma006564.1 Bma11g00863 91265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00863 219 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Bma11g00863 219 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 24 214 - -
Bma11g00863 219 Gene3D AP2/ERF domain 28 88 IPR036955 GO:0003700|GO:0006355
Bma11g00863 219 MobiDBLite consensus disorder prediction 165 188 - -
Bma11g00863 219 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Bma11g00863 219 Pfam AP2 domain 29 76 IPR001471 GO:0003700|GO:0006355
Bma11g00863 219 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Bma11g00863 219 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Bma11g00863 219 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Bma11g00863 219 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Bma11g00863 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 214 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00437 Bma11g00863 CCT
Bma01g00437 Bma11g00863 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00437 Bma-Chr1:3640282 Bma11g00863 Bma-Chr11:31135087 7.34E-86 dispersed
Bma06g01078 Bma-Chr6:47608439 Bma11g00863 Bma-Chr11:31135087 4.93E-90 dispersed
Bma11g00863 Bma-Chr11:31135087 Bma13g00772 Bma-Chr13:27535521 3.12E-69 dispersed
Bma13g00164 Bma-Chr13:1935806 Bma11g00863 Bma-Chr11:31135087 8.48E-22 dispersed
Bma11g00863 Bma-Chr11:31135087 Bma06g01066 Bma-Chr6:47475190 3.33E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58065 PF00847 AP2 2.90E-12 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00863 - - qsu:112002896 244.588