Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00956 | ATGTCTGACGAACAGAGAGAGATTTCCTTATACCCTTTCCAATCACAAGATGACCTTACTTCAATGGAGATTCCGAACTTAGCCTATCATGATTTCCAACAGTTTGACTCTAATTCATACACCAACTTGTTTGATTGTCTGCCAGCGCCCATGGATTACAGCTCTGTTACGGAACCCTTTGGTCTATTTCTTCCCGAAGTAGAATATAAGCCAGTCGAGCCCGGAAATTCATCATCGGCGCCTCCAATCTCTCCGGCGTCAGCTTCCTCTTCTTCTGAGGCGGGTGCCGACGAAGAAGAGTCTGCTAAAAGCGGGAAGAGTAAGCAGAACAACAAAGTGAAAGAAGATGGATCAAAAGTCAGGAAGAAAGAGAAGAAGGCAAGAGAGCCAAGATTTGCTTTCATGACCAAGAGTGAAGTTGATCTTCTTGAAGATGGATACCGATGGAGAAAATATGGTCAGAAAGCGGTCAAGCATAGCCCCTATCCAAGAAGCTATTACAGATGCACTACTCAGAAATGCATGGTGAAGAAACGAGTGGAGAGATCGTACGAGGACCCGTCTATTGTGATCAATACGTACGAAGGCCAACACAACCATCCGATTCCATCAACCCATAGAGGAATGTACCCGGCCTCACATGTGATGGTCCCACCTTCTTCAATCATAGATCAGCCACCGTTGAGATTTTGTGGAGATATATCGACGGCTGAGAATCAGATCGTTCCCCACGATGTGAACCATCAGACTCTGGATTACATTCAGCAGCTGTTATACTCACACTCACAGCAGTCTGACAATGGACGTTTTTAG | 813 | 45.51 | MSDEQREISLYPFQSQDDLTSMEIPNLAYHDFQQFDSNSYTNLFDCLPAPMDYSSVTEPFGLFLPEVEYKPVEPGNSSSAPPISPASASSSSEAGADEEESAKSGKSKQNNKVKEDGSKVRKKEKKAREPRFAFMTKSEVDLLEDGYRWRKYGQKAVKHSPYPRSYYRCTTQKCMVKKRVERSYEDPSIVINTYEGQHNHPIPSTHRGMYPASHVMVPPSSIIDQPPLRFCGDISTAENQIVPHDVNHQTLDYIQQLLYSHSQQSDNGRF | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 42675043 | 42677510 | - | Bma006753.1 | Bma11g00956 | 91358 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00956 | 270 | PANTHER | WRKY TRANSCRIPTION FACTOR 28-RELATED | 75 | 212 | - | - | |
Bma11g00956 | 270 | ProSiteProfiles | WRKY domain profile. | 138 | 203 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma11g00956 | 270 | MobiDBLite | consensus disorder prediction | 77 | 95 | - | - | |
Bma11g00956 | 270 | Pfam | WRKY DNA -binding domain | 144 | 201 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma11g00956 | 270 | MobiDBLite | consensus disorder prediction | 96 | 128 | - | - | |
Bma11g00956 | 270 | MobiDBLite | consensus disorder prediction | 72 | 128 | - | - | |
Bma11g00956 | 270 | Gene3D | WRKY domain | 128 | 204 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bma11g00956 | 270 | SMART | WRKY_cls | 143 | 202 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma11g00956 | 270 | SUPERFAMILY | WRKY DNA-binding domain | 135 | 203 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bma11g00956 | 270 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 75 | 212 | IPR044810 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g01340 | Bma-Chr6:50333972 | Bma11g00956 | Bma-Chr11:42675043 | 6.26E-36 | dispersed | |
Bma10g01123 | Bma-Chr10:36032713 | Bma11g00956 | Bma-Chr11:42675043 | 3.76E-52 | dispersed | |
Bma11g00956 | Bma-Chr11:42675043 | Bma13g00167 | Bma-Chr13:1952044 | 8.42E-16 | dispersed | |
Bma11g00956 | Bma-Chr11:42675043 | Bma02g00935 | Bma-Chr2:49202332 | 4.78E-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58070 | PF03106 | WRKY | 8.20E-25 | CL0274 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00956 | - | - | rcu:8284011 | 204.142 |