Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00956 ATGTCTGACGAACAGAGAGAGATTTCCTTATACCCTTTCCAATCACAAGATGACCTTACTTCAATGGAGATTCCGAACTTAGCCTATCATGATTTCCAACAGTTTGACTCTAATTCATACACCAACTTGTTTGATTGTCTGCCAGCGCCCATGGATTACAGCTCTGTTACGGAACCCTTTGGTCTATTTCTTCCCGAAGTAGAATATAAGCCAGTCGAGCCCGGAAATTCATCATCGGCGCCTCCAATCTCTCCGGCGTCAGCTTCCTCTTCTTCTGAGGCGGGTGCCGACGAAGAAGAGTCTGCTAAAAGCGGGAAGAGTAAGCAGAACAACAAAGTGAAAGAAGATGGATCAAAAGTCAGGAAGAAAGAGAAGAAGGCAAGAGAGCCAAGATTTGCTTTCATGACCAAGAGTGAAGTTGATCTTCTTGAAGATGGATACCGATGGAGAAAATATGGTCAGAAAGCGGTCAAGCATAGCCCCTATCCAAGAAGCTATTACAGATGCACTACTCAGAAATGCATGGTGAAGAAACGAGTGGAGAGATCGTACGAGGACCCGTCTATTGTGATCAATACGTACGAAGGCCAACACAACCATCCGATTCCATCAACCCATAGAGGAATGTACCCGGCCTCACATGTGATGGTCCCACCTTCTTCAATCATAGATCAGCCACCGTTGAGATTTTGTGGAGATATATCGACGGCTGAGAATCAGATCGTTCCCCACGATGTGAACCATCAGACTCTGGATTACATTCAGCAGCTGTTATACTCACACTCACAGCAGTCTGACAATGGACGTTTTTAG 813 45.51 MSDEQREISLYPFQSQDDLTSMEIPNLAYHDFQQFDSNSYTNLFDCLPAPMDYSSVTEPFGLFLPEVEYKPVEPGNSSSAPPISPASASSSSEAGADEEESAKSGKSKQNNKVKEDGSKVRKKEKKAREPRFAFMTKSEVDLLEDGYRWRKYGQKAVKHSPYPRSYYRCTTQKCMVKKRVERSYEDPSIVINTYEGQHNHPIPSTHRGMYPASHVMVPPSSIIDQPPLRFCGDISTAENQIVPHDVNHQTLDYIQQLLYSHSQQSDNGRF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 42675043 42677510 - Bma006753.1 Bma11g00956 91358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00956 270 PANTHER WRKY TRANSCRIPTION FACTOR 28-RELATED 75 212 - -
Bma11g00956 270 ProSiteProfiles WRKY domain profile. 138 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma11g00956 270 MobiDBLite consensus disorder prediction 77 95 - -
Bma11g00956 270 Pfam WRKY DNA -binding domain 144 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma11g00956 270 MobiDBLite consensus disorder prediction 96 128 - -
Bma11g00956 270 MobiDBLite consensus disorder prediction 72 128 - -
Bma11g00956 270 Gene3D WRKY domain 128 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma11g00956 270 SMART WRKY_cls 143 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma11g00956 270 SUPERFAMILY WRKY DNA-binding domain 135 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma11g00956 270 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 212 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01340 Bma-Chr6:50333972 Bma11g00956 Bma-Chr11:42675043 6.26E-36 dispersed
Bma10g01123 Bma-Chr10:36032713 Bma11g00956 Bma-Chr11:42675043 3.76E-52 dispersed
Bma11g00956 Bma-Chr11:42675043 Bma13g00167 Bma-Chr13:1952044 8.42E-16 dispersed
Bma11g00956 Bma-Chr11:42675043 Bma02g00935 Bma-Chr2:49202332 4.78E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58070 PF03106 WRKY 8.20E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00956 - - rcu:8284011 204.142