Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00967 | ATGTCTAATACACCTCAAAGAAAAATGGGTAGGGGAAAGGTCGAGATCAAACGGATCGAAAACACTACAAATCGTCAAGTCACTTTCTGCAAAAGGAGAAACGGGTTGCTGAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATAGTCTTCTCCACCAGGGGTCGTCTGTACGAGTATGCAAATAACAGTGTTAAAGAAACGATTCGGAAGTATAAAAAGGTAAGCTGTAATTCGCCAAACACCACCTCGATTTCGGAAGCTAATGCTCAGTTTTACCAAGAAGAAGCTGATAAGCTACGGACGCTAATTGCTAACTTGCAAAATTCAAACAAAGATATGATGCCAGAATCTGTAAGTTCCATGCCTGTGAATGAGTTGAGAAAAATGGATCGTACGTTAGAGAAAGCAATTAGCAAGATCAGATCCAAAAAGAATGAGCTCCTCTTTGCAGAGATTGAGTACATGCGCAAAAGGGAAATCGACTTGCACAACAATAATCAGCTTCTTCGAGCAAAGATAGCAGAGAATGAGAGAAACCAGCAAAACATGAACGTGATGGGAGGAGGAAGCTTTGAATTAATGCAGTCTCAACAATATGACGTGAGAAACTATTTTCCAGTGAATGCATTACAACCCGCCAATCAGGAGTATCCACGTCAAGACCACATGTCCCTTCAATTAGGCTAA | 705 | 41.56 | MSNTPQRKMGRGKVEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKETIRKYKKVSCNSPNTTSISEANAQFYQEEADKLRTLIANLQNSNKDMMPESVSSMPVNELRKMDRTLEKAISKIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAENERNQQNMNVMGGGSFELMQSQQYDVRNYFPVNALQPANQEYPRQDHMSLQLG | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 43266137 | 43276792 | - | Bma006777.1 | Bma11g00967 | 91369 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00967 | 234 | Pfam | K-box region | 92 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma11g00967 | 234 | Gene3D | - | 21 | 104 | IPR036879 | GO:0003677|GO:0046983 | |
Bma11g00967 | 234 | PRINTS | MADS domain signature | 31 | 46 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00967 | 234 | PRINTS | MADS domain signature | 46 | 67 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00967 | 234 | PRINTS | MADS domain signature | 11 | 31 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00967 | 234 | ProSiteProfiles | K-box domain profile. | 95 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma11g00967 | 234 | CDD | MADS_MEF2_like | 10 | 84 | IPR033896 | GO:0000977|GO:0045944 | |
Bma11g00967 | 234 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 9 | 222 | - | - | |
Bma11g00967 | 234 | ProSitePatterns | MADS-box domain signature. | 11 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00967 | 234 | ProSiteProfiles | MADS-box domain profile. | 9 | 69 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00967 | 234 | Coils | Coil | 95 | 118 | - | - | |
Bma11g00967 | 234 | Coils | Coil | 132 | 159 | - | - | |
Bma11g00967 | 234 | PANTHER | FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE | 9 | 222 | - | - | |
Bma11g00967 | 234 | SMART | madsneu2 | 9 | 68 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00967 | 234 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 18 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00967 | 234 | SUPERFAMILY | SRF-like | 10 | 88 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01473 | Bma-Chr1:27996969 | Bma11g00967 | Bma-Chr11:43266137 | 1.39E-85 | dispersed | |
Bma11g00967 | Bma-Chr11:43266137 | Bma12g00686 | Bma-Chr12:29282056 | 2.26E-94 | dispersed | |
Bma11g00967 | Bma-Chr11:43266137 | Bma11g00969 | Bma-Chr11:43356901 | 1.60E-144 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58071 | PF01486 | K-box | 3.40E-22 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00967 | K09264 | - | qsu:112006550 | 356.295 |