Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00967 ATGTCTAATACACCTCAAAGAAAAATGGGTAGGGGAAAGGTCGAGATCAAACGGATCGAAAACACTACAAATCGTCAAGTCACTTTCTGCAAAAGGAGAAACGGGTTGCTGAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATAGTCTTCTCCACCAGGGGTCGTCTGTACGAGTATGCAAATAACAGTGTTAAAGAAACGATTCGGAAGTATAAAAAGGTAAGCTGTAATTCGCCAAACACCACCTCGATTTCGGAAGCTAATGCTCAGTTTTACCAAGAAGAAGCTGATAAGCTACGGACGCTAATTGCTAACTTGCAAAATTCAAACAAAGATATGATGCCAGAATCTGTAAGTTCCATGCCTGTGAATGAGTTGAGAAAAATGGATCGTACGTTAGAGAAAGCAATTAGCAAGATCAGATCCAAAAAGAATGAGCTCCTCTTTGCAGAGATTGAGTACATGCGCAAAAGGGAAATCGACTTGCACAACAATAATCAGCTTCTTCGAGCAAAGATAGCAGAGAATGAGAGAAACCAGCAAAACATGAACGTGATGGGAGGAGGAAGCTTTGAATTAATGCAGTCTCAACAATATGACGTGAGAAACTATTTTCCAGTGAATGCATTACAACCCGCCAATCAGGAGTATCCACGTCAAGACCACATGTCCCTTCAATTAGGCTAA 705 41.56 MSNTPQRKMGRGKVEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKETIRKYKKVSCNSPNTTSISEANAQFYQEEADKLRTLIANLQNSNKDMMPESVSSMPVNELRKMDRTLEKAISKIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAENERNQQNMNVMGGGSFELMQSQQYDVRNYFPVNALQPANQEYPRQDHMSLQLG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43266137 43276792 - Bma006777.1 Bma11g00967 91369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00967 234 Pfam K-box region 92 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma11g00967 234 Gene3D - 21 104 IPR036879 GO:0003677|GO:0046983
Bma11g00967 234 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Bma11g00967 234 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Bma11g00967 234 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Bma11g00967 234 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma11g00967 234 CDD MADS_MEF2_like 10 84 IPR033896 GO:0000977|GO:0045944
Bma11g00967 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 222 - -
Bma11g00967 234 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Bma11g00967 234 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Bma11g00967 234 Coils Coil 95 118 - -
Bma11g00967 234 Coils Coil 132 159 - -
Bma11g00967 234 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 9 222 - -
Bma11g00967 234 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Bma11g00967 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Bma11g00967 234 SUPERFAMILY SRF-like 10 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01473 Bma-Chr1:27996969 Bma11g00967 Bma-Chr11:43266137 1.39E-85 dispersed
Bma11g00967 Bma-Chr11:43266137 Bma12g00686 Bma-Chr12:29282056 2.26E-94 dispersed
Bma11g00967 Bma-Chr11:43266137 Bma11g00969 Bma-Chr11:43356901 1.60E-144 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58071 PF01486 K-box 3.40E-22 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00967 K09264 - qsu:112006550 356.295