Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma11g00969 | TTTCCAGATCGAAATCTAGCCATGTCTAATTCACCTCAAAGAAAAATGGGTAGGGGAAAGATTGAGATCAAACGGATCGAAAACACTACGAATCGACAAGTCACTTTCTGCAAAAGGAGAAACGGGTTGCTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTTCCCTCATAGTCTTCTCCAGCAGTGGTCGCCTCTACGAGTATGCAAGCAACAGTGTTAAGGAAACAATTGAAAGATATAGAAAGGTAAGCTGTGATTCATCAAACACCGGATCGATTTCAGAAGCTAATGCTCAGTTTTACCAAGAAGAAGCTAATAAGTTGCGGATGCTGATCTCAAAGTTGCAAAATTCAAACCAGGATATGATGGGGGAGTCTGTGAGTTCTTTGTCTCTCAAGAAATTGAAAGATTTGGACATTAAGTTAGAGAAAGCAATTTGCAAGGTCAGATCCAAAAAGAATGAGCTCCTTTTTGCAGAGATTGAGTACATGAGAAAAAGGGAAATCGATTTGCACAACAATAATCGGCTTCTACGAGCAAAGATAGCAGAGAATGAGAGAAACCAGCTAGGCATGAACGCGATTGGAGGAAGCTTTGAACTAATGCAGTCTCAGCAATTGGACGTGAGAAACTATTTTCAAGTGAATGCATTACAACCTGCCAATCAGGAGTATCCACGGCAAGACCACATGTCCCTTCAATTAGGG | 720 | 41.25 | FPDRNLAMSNSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSSGRLYEYASNSVKETIERYRKVSCDSSNTGSISEANAQFYQEEANKLRMLISKLQNSNQDMMGESVSSLSLKKLKDLDIKLEKAICKVRSKKNELLFAEIEYMRKREIDLHNNNRLLRAKIAENERNQLGMNAIGGSFELMQSQQLDVRNYFQVNALQPANQEYPRQDHMSLQLG | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 43356901 | 43374962 | + | Bma030479 | Bma11g00969 | 91371 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma11g00969 | 240 | CDD | MADS_MEF2_like | 17 | 93 | IPR033896 | GO:0000977|GO:0045944 | |
Bma11g00969 | 240 | ProSiteProfiles | K-box domain profile. | 102 | 192 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma11g00969 | 240 | Pfam | K-box region | 100 | 186 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma11g00969 | 240 | Coils | Coil | 102 | 122 | - | - | |
Bma11g00969 | 240 | PRINTS | MADS domain signature | 18 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00969 | 240 | PRINTS | MADS domain signature | 38 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00969 | 240 | PRINTS | MADS domain signature | 53 | 74 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00969 | 240 | Coils | Coil | 139 | 159 | - | - | |
Bma11g00969 | 240 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 25 | 72 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00969 | 240 | ProSitePatterns | MADS-box domain signature. | 18 | 72 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00969 | 240 | Gene3D | - | 29 | 92 | IPR036879 | GO:0003677|GO:0046983 | |
Bma11g00969 | 240 | PANTHER | FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE | 16 | 228 | - | - | |
Bma11g00969 | 240 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 16 | 228 | - | - | |
Bma11g00969 | 240 | ProSiteProfiles | MADS-box domain profile. | 16 | 76 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00969 | 240 | SMART | madsneu2 | 16 | 75 | IPR002100 | GO:0003677|GO:0046983 | |
Bma11g00969 | 240 | SUPERFAMILY | SRF-like | 17 | 89 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma11g00969 | Bma-Chr11:43356901 | Bma12g00686 | Bma-Chr12:29282056 | 5.03E-95 | dispersed | |
Bma11g00967 | Bma-Chr11:43266137 | Bma11g00969 | Bma-Chr11:43356901 | 1.60E-144 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58072 | PF01486 | K-box | 1.80E-22 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma11g00969 | K09264 | - | qsu:112006550 | 341.273 |