Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma11g00969 TTTCCAGATCGAAATCTAGCCATGTCTAATTCACCTCAAAGAAAAATGGGTAGGGGAAAGATTGAGATCAAACGGATCGAAAACACTACGAATCGACAAGTCACTTTCTGCAAAAGGAGAAACGGGTTGCTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTTCCCTCATAGTCTTCTCCAGCAGTGGTCGCCTCTACGAGTATGCAAGCAACAGTGTTAAGGAAACAATTGAAAGATATAGAAAGGTAAGCTGTGATTCATCAAACACCGGATCGATTTCAGAAGCTAATGCTCAGTTTTACCAAGAAGAAGCTAATAAGTTGCGGATGCTGATCTCAAAGTTGCAAAATTCAAACCAGGATATGATGGGGGAGTCTGTGAGTTCTTTGTCTCTCAAGAAATTGAAAGATTTGGACATTAAGTTAGAGAAAGCAATTTGCAAGGTCAGATCCAAAAAGAATGAGCTCCTTTTTGCAGAGATTGAGTACATGAGAAAAAGGGAAATCGATTTGCACAACAATAATCGGCTTCTACGAGCAAAGATAGCAGAGAATGAGAGAAACCAGCTAGGCATGAACGCGATTGGAGGAAGCTTTGAACTAATGCAGTCTCAGCAATTGGACGTGAGAAACTATTTTCAAGTGAATGCATTACAACCTGCCAATCAGGAGTATCCACGGCAAGACCACATGTCCCTTCAATTAGGG 720 41.25 FPDRNLAMSNSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSSGRLYEYASNSVKETIERYRKVSCDSSNTGSISEANAQFYQEEANKLRMLISKLQNSNQDMMGESVSSLSLKKLKDLDIKLEKAICKVRSKKNELLFAEIEYMRKREIDLHNNNRLLRAKIAENERNQLGMNAIGGSFELMQSQQLDVRNYFQVNALQPANQEYPRQDHMSLQLG 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 43356901 43374962 + Bma030479 Bma11g00969 91371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma11g00969 240 CDD MADS_MEF2_like 17 93 IPR033896 GO:0000977|GO:0045944
Bma11g00969 240 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma11g00969 240 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma11g00969 240 Coils Coil 102 122 - -
Bma11g00969 240 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Bma11g00969 240 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Bma11g00969 240 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Bma11g00969 240 Coils Coil 139 159 - -
Bma11g00969 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Bma11g00969 240 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Bma11g00969 240 Gene3D - 29 92 IPR036879 GO:0003677|GO:0046983
Bma11g00969 240 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 16 228 - -
Bma11g00969 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 228 - -
Bma11g00969 240 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Bma11g00969 240 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Bma11g00969 240 SUPERFAMILY SRF-like 17 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00969 Bma-Chr11:43356901 Bma12g00686 Bma-Chr12:29282056 5.03E-95 dispersed
Bma11g00967 Bma-Chr11:43266137 Bma11g00969 Bma-Chr11:43356901 1.60E-144 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58072 PF01486 K-box 1.80E-22 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma11g00969 K09264 - qsu:112006550 341.273