Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00007 ATGGCGCGGGGTCATCCTCCCCACCTATCGAAGCCCGGTCTACCCGCGACGGAGGACGACGCTGATCCGACCCGTTTAGCCTCCGTGGCGTTAGGGGCTTCCGTGGGCGGTGGACTCCGGAAGAAGGGAATTGGGGTTAGGGCGTGGCTGCTTTTGGACTCTACCGGTGTTGCGCAGGTCGTGGAGGTGGGCAAGCACGCAATCATGCGCCGGACGGGTTTGCCTGCGCGCGATCTTCGGATTTTGGATCCTTTATTGTCGTATCCTTCAACCATTTTGGGCCGTGAGAGAGCGATTGTGATTAATCTGGAGCATATTAAAGCCATTATCACGGCTCAAGAGGTGCTTCTGTTGAACTCTAGAGACCCCTCGGTGACGCCCTTCGTTGAAGAGCTACAGAGACGGATACTGCGCCACCACCAAGCCATCAAGGCACAAGAGGGTGAGGGCGCTGATTCAAATTGGACTGATATCTATGATTTGGGAGAGGCAAGATCAAGGGCCGTAAGTCCAGAAAATTCATATCAAGGATTTCCACAGTCTCAAGAAGGAAAAGAGGAAGGAAAGGAAGGTGGGAAACAAGGTCTTGATAACCGCGATGGATTAAAGGTTCTCCCATTTGAGTTTGTTGCATTGGAAGCATGCCTTGAATCTACTTGCAGTAACTTAGAGAGCGAAGCTAAGACATTGGAGCAAGAGGCTCACCCAGCTTTGGATAAGCTGACATCCAAGATCAGTACTCTCAATTTGGAACGTGTTCGTCAAATCAAAAGCCGATTGGTTGCAATAACTGGTCGAGTGCAAAAGATGAGGGATGAATTAGAACATTTGCTTGATGACGATGACGATATGGCTGAGATGTATTTGACAGAGAAGTTGGCTCAACAACAACTAGAAAACTCTTCCACATCCTCAATGGATGATGGAAATAACATGGACGATGGAGCTCTTCCCTCAGATATCGACCTCAGGTTACCTTCCGAAATATCAGTAGATGGTGGTGGCATCCCGAGTAATTATGAAAGTGACATCCAGAACAATGAAGAACCTCAACACCCGCTTTTTGGTGGACCTAATGCACTTAGCCATGGAACCCATACGAGCACTACTCATAGTGCTTTAAGCAAACACCTTGATGTGGATGAGCTTGAAATGCTTTTAGAGGCATACTTTGTTCAAATCGATGGTACTTCAAACAAACTATCTACGCTTCGAGAGTATGTGGACGACACAGAAGATTACATAAACATAATGTTGGACGACAAACAGAACCATCTTCTCCAAATGGGAGTTATGTTAACGACAGCAACTCTCGTGGTCAGCGCCTTTGTTGTGGTGGCTGGAATATTTGGCATGAACATACACATCGAGCTCTTCGACCCAGAACTAGCAGGTATGCCTCAATTTCTTTGGACAGTCGGTGGAAGTGCCGCAGGAAGCGTGTTCCTCTATGTGTTTGCCATTGCCTGGTGCAAATACAAACGGTTGCTTGAGTGA 1497 47.9 MARGHPPHLSKPGLPATEDDADPTRLASVALGASVGGGLRKKGIGVRAWLLLDSTGVAQVVEVGKHAIMRRTGLPARDLRILDPLLSYPSTILGRERAIVINLEHIKAIITAQEVLLLNSRDPSVTPFVEELQRRILRHHQAIKAQEGEGADSNWTDIYDLGEARSRAVSPENSYQGFPQSQEGKEEGKEGGKQGLDNRDGLKVLPFEFVALEACLESTCSNLESEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKMRDELEHLLDDDDDMAEMYLTEKLAQQQLENSSTSSMDDGNNMDDGALPSDIDLRLPSEISVDGGGIPSNYESDIQNNEEPQHPLFGGPNALSHGTHTSTTHSALSKHLDVDELEMLLEAYFVQIDGTSNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFDPELAGMPQFLWTVGGSAAGSVFLYVFAIAWCKYKRLLE 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 267972 271541 + Bma006877.1 Bma12g00007 91433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00007 498 Gene3D Magnesium transport protein CorA, transmembrane region 179 426 - -
Bma12g00007 498 Gene3D - 41 120 - -
Bma12g00007 498 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 32 498 - -
Bma12g00007 498 MobiDBLite consensus disorder prediction 183 197 - -
Bma12g00007 498 MobiDBLite consensus disorder prediction 296 310 - -
Bma12g00007 498 MobiDBLite consensus disorder prediction 330 370 - -
Bma12g00007 498 Pfam CorA-like Mg2+ transporter protein 381 486 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Bma12g00007 498 MobiDBLite consensus disorder prediction 1 21 - -
Bma12g00007 498 Coils Coil 213 233 - -
Bma12g00007 498 MobiDBLite consensus disorder prediction 167 199 - -
Bma12g00007 498 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 32 498 IPR039204 -
Bma12g00007 498 CDD Mrs2_Mfm1p-like 49 496 IPR039204 -
Bma12g00007 498 Coils Coil 129 149 - -
Bma12g00007 498 MobiDBLite consensus disorder prediction 296 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00007 - - - mnt:21394404 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00852 Bma-Chr10:15344481 Bma12g00007 Bma-Chr12:267972 1.04E-21 dispersed
Bma12g00007 Bma-Chr12:267972 Bma13g00660 Bma-Chr13:16386481 4.50E-115 dispersed
Bma12g00007 Bma-Chr12:267972 Bma12g00295 Bma-Chr12:4172559 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00660 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.4e-198 689.1
Bma06g00739 . 36 417 MRS2 Gene Family AT1G16010 56.7 1.4e-113 406.8
Bma12g00007 . 1 498 MRS2 Gene Family AT3G19640 62.2 5.3e-151 531.2
Bma12g00023 . 1 447 MRS2 Gene Family AT3G58970 63.6 3.6e-143 505.0
Bma06g00739 . 26 417 MRS2 Gene Family AT2G03620 66.8 4.3e-133 471.5
Bma13g00660 . 13 443 MRS2 Gene Family AT2G03620 52.5 1.5e-109 393.3
Bma12g00023 . 62 446 MRS2 Gene Family AT4G28580 50.5 4.0e-91 332.0
Bma13g00660 . 50 379 MRS2 Gene Family AT5G09690 51.1 2.6e-74 275.8
Bma13g00660 . 1 443 MRS2 Gene Family AT1G80900 82.4 4.4e-197 684.1
Bma06g00739 . 36 417 MRS2 Gene Family AT1G80900 57.0 2.1e-114 409.5
Bma07g01468 . 121 460 MRS2 Gene Family AT5G22830 81.5 2.6e-155 545.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00007 Bma_Chr12 FPKM 21.482084 21.404417 6.911942 5.39703 1.348384 0.94408 1.153435 15.924991 17.368898 14.597442