Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00016 ATGGATCTGAACTATATCCTGAGAATTCCATGGAATTCTACGGACTGCGAAGCTAAGAATTTCAATCCCTCCAATACAACCCCTCGAAATGACACCACCGATAACCCATGTTGCCAGACCATCTTGTCCCTCTTTGGAATTGCCCTTTCCCAGCACCTCAAAGAAACCTCTCAGTTTCATCTCTCCGACCTTCCCACCTCCATTTCCTGCCTCCATGATTTCCAATCCAAGCTTTCCCTGCTCTCTCTCCCAAACAATCTCGTCTCCTATTGTTTTGATCCTATGCAGTTTGTGATCACCCCTAATGTCTGTGCTCAAATTCAATCAACCCGCGATTGGGTTGCCAAGCTTGGGCACAGCACTCCTCTCGATACTGGGTGCCGCTCAGACCTCACTGATCTCACCAACTGTGATTCCTGCGTCGAGGCTGGGTTTCGGGTCCAAAATACTTTGACTGGAATTGATGGGAATAAATCTCACTCCATTCATTGCTTTTACTTTGCTGTACTGTACGCTGCCGGAATTGTGAACGAGTTTGGGCCGCAGAGTAACGGCGCTGTGACTTGTATTTTTGGGTTGCAGTTGAATTTGAAGCCGAGTCCAAAAAGTAAGGATCATTCAGCTCTTGTCTATGGCCTGACTGGTGCTGGGATTGCACTACTTACTATGTCTTTTCTTTTCTGGTATGGAAGAAGTTGGAGGAAAAGGATGGGGGGATCAAGCGTAAAGTTAGGGTATGAACTCGATGATCAGGGGTCTAGGCCAGGGGTGAAGCCTAACACTGGTTCCATTTGGTTCAAAATTCAGGAACTTGAGAGGGCCACTGATAATTTTTCCCAGAAAAATTTCATTGGTAGAGGTGGATTTGGTGTAGTTTACAAAGGAACTTTGGCAAATGGAAGTCTTGTTGCTGTGAAGAAAGTGGTAGAGTCGGACTTCCAAGGAGATATGGAATTTCGTAACGAGGTTGAGATAATTAGTAATTTGAAGCACAGAAATCTTGTTCCACTAAGAGGGTGTTGTGTGATTGATGGTGGTGGAGATGAAAATCAGAGATATCTTGTGTATGATTATATGCCAAATGGAAATCTGGACAACCATCTGTTCCCTTCGTCGCATAATGGAGGTGGGGCTTTGACGAAGCCATTGACATGGCCTCAAAGGAAGAACATAATATTGGATGTGGCTAAGGGATTGGCTTATTTACATTATGGAGTAAAACCTGCAATCTATCATAGAGATATCAAGGCCACAAACATCCTTCTTGATGCAGACATGAGAGCAAGAGTAGCTGACTTTGGGCTGGCAAAGCAGAGCAGAGAAGGACAATCTCATCTCACAACTCGAGTAGCAGGAACCCATGGATATTTAGCTCCGGAATATGCGCTGTATGGACAACTCACAGAGAAGAGTGATGTTTACAGCTTTGGAGTGGTGGTATTGGAGATAATGTGTGGAAGAAGAGCTCTTGATTTGACATCATCGGATTCGCCCCAGGCTTTCCTGATCACTGATTGGGTCTGGTCGTTGATGAAGTCTGGAAGAGTAGAAGAGGTCTTAGACGCATCGGTGTTCCAAAAGGAAGATTCTTCAAATTCTAATCCCAAGGCAATAATGGAGAGATTTGTGCTGGTTGGGATATTGTGTGCTCATGTAATGGTGGCCCTGAGACCCACCATTTTAGATGCTCTCAAAATGTTGGAAGGAGATATTGAAGTTCCTCAAATTCCAGATCGGCCTCTGCCTCTCAGTCACCCTTCTTTTTACGATGGTAGTCGAAATTTCAGCATTTCTCCAGCGTTAAGTGGACCTCGGTTGTGCAGTGCAGACATGCTGAGATGA 1842 45.01 MDLNYILRIPWNSTDCEAKNFNPSNTTPRNDTTDNPCCQTILSLFGIALSQHLKETSQFHLSDLPTSISCLHDFQSKLSLLSLPNNLVSYCFDPMQFVITPNVCAQIQSTRDWVAKLGHSTPLDTGCRSDLTDLTNCDSCVEAGFRVQNTLTGIDGNKSHSIHCFYFAVLYAAGIVNEFGPQSNGAVTCIFGLQLNLKPSPKSKDHSALVYGLTGAGIALLTMSFLFWYGRSWRKRMGGSSVKLGYELDDQGSRPGVKPNTGSIWFKIQELERATDNFSQKNFIGRGGFGVVYKGTLANGSLVAVKKVVESDFQGDMEFRNEVEIISNLKHRNLVPLRGCCVIDGGGDENQRYLVYDYMPNGNLDNHLFPSSHNGGGALTKPLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRRALDLTSSDSPQAFLITDWVWSLMKSGRVEEVLDASVFQKEDSSNSNPKAIMERFVLVGILCAHVMVALRPTILDALKMLEGDIEVPQIPDRPLPLSHPSFYDGSRNFSISPALSGPRLCSADMLR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 632419 634260 + Bma006891.1 Bma12g00016 91442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00016 613 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 611 - -
Bma12g00016 613 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 1 611 - -
Bma12g00016 613 CDD STKc_IRAK 284 569 - -
Bma12g00016 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Bma12g00016 613 Coils Coil 609 613 - -
Bma12g00016 613 SUPERFAMILY Protein kinase-like (PK-like) 259 568 IPR011009 -
Bma12g00016 613 ProSiteProfiles Protein kinase domain profile. 278 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00016 613 SMART serkin_6 278 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00016 613 Gene3D Phosphorylase Kinase; domain 1 251 358 - -
Bma12g00016 613 Gene3D Transferase(Phosphotransferase) domain 1 359 575 - -
Bma12g00016 613 ProSitePatterns Protein kinases ATP-binding region signature. 284 307 IPR017441 GO:0005524
Bma12g00016 613 Pfam Protein kinase domain 279 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00016 613 Pfam SPARK 1 165 IPR043891 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00016 Bma-Chr12:632419 Bma14g00974 Bma-Chr14:11374834 2.71E-76 dispersed
Bma12g00016 Bma-Chr12:632419 Bma13g00923 Bma-Chr13:39663759 2.04E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66800 PF00069 Pkinase 3.40E-44 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00016 - - zju:107415189 905.975