Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00023 ATGGGGAAGGGTCTCTTCTCTTTTCGCCTCACCAACCCCCGTCGTCGCTCTAAAACCAAGCATCACCCTCATCCCTCCCCTCCTTCCTCGCTTCCTGGCCCCACTTCCCCGCCCAACAACGGCCTTATTGCTGCCGCCGCTGCTGCTGCTGGGGCGGCAGCAGCCAAGGGGAAGAAGAAGGCTGGTGGACCTAGGCTGTGGATGCGTTTTGACCGATGGGGCCGCTCTGAGCTGGTAGAGTGCGATAAGAGCGCCATTATCCGGCTTGCTGGAATTCCTGCCCGGGATTTGAGAATCCTTGGCCCTGTTTTCTCTCAATCGTCCAATATTCTTGGCAGAGAGAAGGCCATGGTTGTTAACTTAGAGTTCATAAAGGCAATAGTTACTGCAGAAGAAGTGCTTTTACTTGAGCCCCTTCGTCAGGAGGTTCTTCCATTTGTGGATCAGCTAAGACTGCAACTTCCTCAGAAAAGTCCATCTAGGACCCACGGAACTGAAACTTTGGATGAACAAGAGAATGATGTGCATGTTTTGACGGGTAGGCAATGGTTACCTGTCTCGGAAACAGCTGAAGCTTTGAACAGTGAGCTCCCATTTGAGTTTCAGGTTCTGGAAATTGCATTAGAGGTTGTTTGTTTATACTTAGACTCAAGGGTAGCAGAGCTTGAGAGAGATGCATACCCTATTCTTGATGAACTGGCTAGGAGTGTCAGCACCAAAAATCTTGAACACGTGAGAAGTTTGAAAAGCAATCTTACTCGTCTACTTGCACGCGTGCAAAAGGTGAGGGATGAAATCGAACATCTATTGGATGACAATGAAGACATGGCGCATTTATATTTAACAAGGAAGTGGATGCAGAATCAACAATCCATGGCTTTGTTGGGCGGTGTAACTTCCAATAGTTTATCTGCTCCTTCCTTCCGTCTTCATCGACTTAATTCTACACGGAGCGGCAGTTTGGCGACTAGCAACCATTTGGAAGATAATGATGTAGAAGATCTTGAGATGTTGCTGGAGGCATATTTTATGCAGTTGGATGGAACTCGCAACAAGATACTATCGGTTCGGGAGTACATAGATGACACAGAGGACTACGTGAACATTCAACTGGACAACCAGCGAAATGAGCTTATTCAACTTCAGTTGATACTGACCATCGCATCATTTGCCGTAGCAATGGAAACTTGGATATCTGGACTGTTTGGAATGAACATCCCCTGTACACTCTACAACATCGATGGGATATTTTTGTACTCTGTGGAAGCTATGACGGCATTTTGTGTCTTACTATTCCTGTTTATTTTAGGATATGCAAGATGGAAGAAGCTACTTGGTTCCTAA 1344 46.5 MGKGLFSFRLTNPRRRSKTKHHPHPSPPSSLPGPTSPPNNGLIAAAAAAAGAAAAKGKKKAGGPRLWMRFDRWGRSELVECDKSAIIRLAGIPARDLRILGPVFSQSSNILGREKAMVVNLEFIKAIVTAEEVLLLEPLRQEVLPFVDQLRLQLPQKSPSRTHGTETLDEQENDVHVLTGRQWLPVSETAEALNSELPFEFQVLEIALEVVCLYLDSRVAELERDAYPILDELARSVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRKWMQNQQSMALLGGVTSNSLSAPSFRLHRLNSTRSGSLATSNHLEDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAVAMETWISGLFGMNIPCTLYNIDGIFLYSVEAMTAFCVLLFLFILGYARWKKLLGS 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 735368 737798 + Bma006898.1 Bma12g00023 91449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00023 447 CDD Mrs2_Mfm1p-like 67 444 IPR039204 -
Bma12g00023 447 MobiDBLite consensus disorder prediction 1 41 - -
Bma12g00023 447 Coils Coil 245 272 - -
Bma12g00023 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 447 IPR039204 -
Bma12g00023 447 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 6 447 - -
Bma12g00023 447 Gene3D - 56 138 - -
Bma12g00023 447 Gene3D Magnesium transport protein CorA, transmembrane region 144 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00023 K16075 MRS2, MFM1; magnesium transporter - zju:107415174 621.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00739 Bma-Chr6:38397233 Bma12g00023 Bma-Chr12:735368 1.23E-83 dispersed
Bma07g01468 Bma-Chr7:50336108 Bma12g00023 Bma-Chr12:735368 2.22E-18 dispersed
Bma12g00023 Bma-Chr12:735368 Bma12g00295 Bma-Chr12:4172559 2.11E-48 dispersed
Bma12g00023 Bma-Chr12:735368 Bma13g00660 Bma-Chr13:16386481 2.11E-97 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00660 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.4e-198 689.1
Bma06g00739 . 36 417 MRS2 Gene Family AT1G16010 56.7 1.4e-113 406.8
Bma12g00007 . 1 498 MRS2 Gene Family AT3G19640 62.2 5.3e-151 531.2
Bma12g00023 . 1 447 MRS2 Gene Family AT3G58970 63.6 3.6e-143 505.0
Bma06g00739 . 26 417 MRS2 Gene Family AT2G03620 66.8 4.3e-133 471.5
Bma13g00660 . 13 443 MRS2 Gene Family AT2G03620 52.5 1.5e-109 393.3
Bma12g00023 . 62 446 MRS2 Gene Family AT4G28580 50.5 4.0e-91 332.0
Bma13g00660 . 50 379 MRS2 Gene Family AT5G09690 51.1 2.6e-74 275.8
Bma13g00660 . 1 443 MRS2 Gene Family AT1G80900 82.4 4.4e-197 684.1
Bma06g00739 . 36 417 MRS2 Gene Family AT1G80900 57.0 2.1e-114 409.5
Bma07g01468 . 121 460 MRS2 Gene Family AT5G22830 81.5 2.6e-155 545.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00023 Bma_Chr12 FPKM 24.935232 23.321325 1.420246 1.357852 33.100197 31.406473 36.325886 0.399576 0.457965 0.276511