Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00028 ATGGGTGTTTCAAATAAAACTCCAGAATTTATTAAGATGAACCCTATTGGGAAGGTCCCTGTGCTGGAGACACCTGATGGTCCCATATTTGAGAGCAATGCCATAGCAAGATACGTTTCTCGCTTGAAGACCCATTGCAATCTATTTGCCTCTTCTCCTATTGATTATGGCCACGTTGAACAGTGGATTGATTTTGCATCATTGGAAATTGATGTCCACATTTTGACTTGGTTTAGACCAAGATGGGGTTATGCTCCATATCTGCCTCCTGTCGAGGAAGCTGCTATCTCCGCTTTGAAGAGAGCACTTGGTGCTTTGAACTTAATGACCAAGAGCTTCACCTCAGAATTCCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAACCAAACTTCAAAAAGGTACTTGGTGACGTGAAGCAAACTGAGGCTGTTCCACCAATTCAATCTGCAAAAAAGCCTTCCCAGCCTAAAGAGCCTGCTAAGCCAAAGCATAAGGATGAGACAAAGAAAGAAGTTAAGAAAGAAGAGACAAAGGAAAAGGCAAAAGTGGAAGCTGGCGAGGAAGAAGAAGAAGCACCAAAGCCTAAACCTAAAAATCCACTTGATCTGTTACCTCCCAGTCCGATGATACTGGATGAATGGAAACGGCTCTACTCTAATACAAAGACCAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGATCCGGAGGGTTACTCTCTTTGGTTCTGTGATTACAAATACAACAATGAGAACACCGTTTCCTTCGTTACACTGAACAAGGTCAGTGGTTTTCTTCAGCGCATGGATCTTGCCAGAGTTCTAGATGCGCTTGGAGAGTCCCTTCCATGCGCCAAGTATGATTCATGGATGGTGTATATGCCTGAAGGTGAATTCTTGTCACGCATTGGCCCAACTGAGTTTTTCAAGGATCTCGAGAAGTACGGAGGTCCAAATGCTGTTCAGGAGTGGAGAAAACTTCTGGATGCAGTACTTCCAATGTCGGCTGCAGCAATGGCTCTGCCTCCTCTGTCGATCCGAGGGGATTTGGGAGTTATTTCTACTGCTGCAGCTAGATATGCTCCCGCTCTATTGAAATCATTCTTCCAAATGGGGCCTCGAGGTGCTCTTGGTGCTACCAAACTTCTTAGACCTTTCTCTGAAATCGTGGACTCATTAGAACTGAAAGACCAGTTTATACGTAATTGGATTGACCTTCTAGCTTTCTTGCTTGCTGGGGTCAAATCCAATGTTTACATGTTTGCAGAATGGTACAAGCCAGGTTGTTGTCTTGAGTACCCTCTTCATGGAACTGGTGCTCTTATTGATGCTCTCGTTCGTGGGTTGGATAAGTTTGGAGGGCGTCTCTCTCTACGAAGTCATGTCGATAAAGTAGTCGTAGAGAATAGCCGTGCCGTTGGAGTCAGGCTTCGAAGTGGTCAATTTATACGAGCAAAGAAGGCTGTTGTGAGCAATGCAAGCATGTGGGACACCATAGCTTTGTTACCCAAAGAAGCTGTTCCCAAAGATTATGCAGAGCAGGTTAAGATGACACCACAGTGTGAATCATTCATGCATCTCCATTTGGGGTTTGATGCAGAAGTTGCTCGGAAAGACATGGGAATCCATCACATTGTTATAAATGATTGGGAAAGAGGCGTCGATGCAGATCAGAATGTAGTGTTAATATCAGTCCCAAGTGTGCTTAGTCCAGACCTCGCACCTCCCGGGAAGCACGTTTTGCACGCTTACACACCAGGAACTGAACCATATGGACTTTGGGAAGGACTTGATCGAACAAGTCCCGAATACAAAAATCTCAAAGCCGAACGATCCGAGACAATCAGCTACATTGCAGAACATGTGGTTGGAACGGGCTCCTTTGGTGTTGTTTTCCAAGCAAAATGTAGAGAAACGGGAGAAATTGTTGCTATCAAGAAAGTTCTCCAAGACAAGAGATACAAGAATCGGGAATTGCAAATTATGCAAATGGTGGACCATCCCAACGTTGTGGCACTTAAACATTGTTTCTTTTCAACGACCGACAAAGAAGAGTTGTACCTGAATCTTGTTCTTGAATTTGTTCCTGCAACTGTTAACCGAATTGCAAGGAACTATAGTAGGATCAATCAGAGAATGCCCCTCATATATGTTAAACTTTATACCTATCAAATATGCAGGGCGCTTGCATATATACATAATTGTATCGGTATTTGCCATCGTGATATCAAGCCACAGAACCTGCTTGTGAATCCACACACACATCAGCTCAAACTTTGTGATTTCGGGAGTGCAAAAGTGCTCGTCAAAGGAGAGCTTAATGTTTCGTACATCTGCTCGAGATATTACCGTGCTCCAGAACTCATATTCGGTGCCACCGAGTACACAACTGCCATAGATATATGGTCTACAGGATGTGTGATGGCCGAACTACTTCTCGGACAGCCTTTGTTTCCTGGTGAAAGTGGGGTTGACCAGCTGGTTGAGATCATTAAGGTTTTGGGGACGCCAACCAGAGAGGAGATCAAATGTATGAATCCAAACTATACTGAATTCAAGTTCCCACAGATAAAGCCTCATCCATGGCATAAGGTTTTTCAAAAACGTTTACCCCCAGAAGCGGTCGACCTCGTCTGCCGATTTTTCCAGTATTCACCGAATTTGCGGTGCACTGCGTTGGAAGCTTGTATCCATCCTTTCTTCGATGAGTTGAGGGACCCGAGCACCCGGCTTCCGAACGGCCGGCCGCTTCCTCCTCTGTTTAATTTCAAAGCTCAGGAGTTGACAGGGTTAGAGGCAGATGTGGTGAATCGAGTTATCCCGGAGCATGCTCGGAAGCAGAACTTGTTCATGGCTTTGCACGCGTGA 2883 44.92 MGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVSRLKTHCNLFASSPIDYGHVEQWIDFASLEIDVHILTWFRPRWGYAPYLPPVEEAAISALKRALGALNLMTKSFTSEFPHVERYFWTLVNQPNFKKVLGDVKQTEAVPPIQSAKKPSQPKEPAKPKHKDETKKEVKKEETKEKAKVEAGEEEEEAPKPKPKNPLDLLPPSPMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNNENTVSFVTLNKVSGFLQRMDLARVLDALGESLPCAKYDSWMVYMPEGEFLSRIGPTEFFKDLEKYGGPNAVQEWRKLLDAVLPMSAAAMALPPLSIRGDLGVISTAAARYAPALLKSFFQMGPRGALGATKLLRPFSEIVDSLELKDQFIRNWIDLLAFLLAGVKSNVYMFAEWYKPGCCLEYPLHGTGALIDALVRGLDKFGGRLSLRSHVDKVVVENSRAVGVRLRSGQFIRAKKAVVSNASMWDTIALLPKEAVPKDYAEQVKMTPQCESFMHLHLGFDAEVARKDMGIHHIVINDWERGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPYGLWEGLDRTSPEYKNLKAERSETISYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMVDHPNVVALKHCFFSTTDKEELYLNLVLEFVPATVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGELNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKAQELTGLEADVVNRVIPEHARKQNLFMALHA 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 841934 856931 - Bma006903.2 Bma12g00028 91454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00028 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Bma12g00028 960 SUPERFAMILY Protein kinase-like (PK-like) 621 931 IPR011009 -
Bma12g00028 960 SUPERFAMILY eEF1-gamma domain 199 278 IPR036433 GO:0003746|GO:0006414
Bma12g00028 960 MobiDBLite consensus disorder prediction 158 199 - -
Bma12g00028 960 Gene3D Phosphorylase Kinase; domain 1 614 701 - -
Bma12g00028 960 ProSitePatterns Protein kinases ATP-binding region signature. 628 652 IPR017441 GO:0005524
Bma12g00028 960 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 616 957 - -
Bma12g00028 960 SUPERFAMILY Thioredoxin-like 5 43 IPR036249 -
Bma12g00028 960 SUPERFAMILY GST C-terminal domain-like 47 147 IPR036282 -
Bma12g00028 960 SUPERFAMILY FAD/NAD(P)-binding domain 356 590 IPR036188 -
Bma12g00028 960 Gene3D Glutaredoxin 1 39 - -
Bma12g00028 960 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 199 278 IPR001662 GO:0003746|GO:0006414
Bma12g00028 960 MobiDBLite consensus disorder prediction 145 207 - -
Bma12g00028 960 Pfam Protein kinase domain 624 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00028 960 Gene3D - 46 108 - -
Bma12g00028 960 Gene3D - 109 151 - -
Bma12g00028 960 CDD STKc_GSK3 617 909 IPR039192 -
Bma12g00028 960 SMART EF1G_2 198 301 IPR001662 GO:0003746|GO:0006414
Bma12g00028 960 ProSiteProfiles Protein kinase domain profile. 622 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00028 960 Pfam Elongation factor 1 gamma, conserved domain 198 278 IPR001662 GO:0003746|GO:0006414
Bma12g00028 960 CDD GST_C_EF1Bgamma_like 55 144 - -
Bma12g00028 960 Pfam Glutathione S-transferase, N-terminal domain 5 41 IPR004045 -
Bma12g00028 960 SMART serkin_6 622 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00028 960 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 199 285 IPR036433 GO:0003746|GO:0006414
Bma12g00028 960 Gene3D Transferase(Phosphotransferase) domain 1 702 950 - -
Bma12g00028 960 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 47 IPR004045 -
Bma12g00028 960 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 616 957 - -
Bma12g00028 960 Gene3D - 437 524 IPR036188 -
Bma12g00028 960 Coils Coil 171 191 - -
Bma12g00028 960 Gene3D - 525 591 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00922 Bma12g00028 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00941 Bma-Chr10:19957040 Bma12g00028 Bma-Chr12:841934 0 dispersed
Bma12g00028 Bma-Chr12:841934 Bma13g00100 Bma-Chr13:1046075 0 dispersed
Bma04g01523 Bma-Chr4:51245589 Bma12g00028 Bma-Chr12:841934 3.11E-27 transposed
Bma05g00922 Bma-Chr5:47122578 Bma12g00028 Bma-Chr12:841934 0 transposed
Bma12g00028 Bma-Chr12:841934 Bma05g00920 Bma-Chr5:47112617 1.24E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66801 PF00069 Pkinase 2.90E-62 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00028 K03083 - jre:108983720 686.797