Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00028 | ATGGGTGTTTCAAATAAAACTCCAGAATTTATTAAGATGAACCCTATTGGGAAGGTCCCTGTGCTGGAGACACCTGATGGTCCCATATTTGAGAGCAATGCCATAGCAAGATACGTTTCTCGCTTGAAGACCCATTGCAATCTATTTGCCTCTTCTCCTATTGATTATGGCCACGTTGAACAGTGGATTGATTTTGCATCATTGGAAATTGATGTCCACATTTTGACTTGGTTTAGACCAAGATGGGGTTATGCTCCATATCTGCCTCCTGTCGAGGAAGCTGCTATCTCCGCTTTGAAGAGAGCACTTGGTGCTTTGAACTTAATGACCAAGAGCTTCACCTCAGAATTCCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAACCAAACTTCAAAAAGGTACTTGGTGACGTGAAGCAAACTGAGGCTGTTCCACCAATTCAATCTGCAAAAAAGCCTTCCCAGCCTAAAGAGCCTGCTAAGCCAAAGCATAAGGATGAGACAAAGAAAGAAGTTAAGAAAGAAGAGACAAAGGAAAAGGCAAAAGTGGAAGCTGGCGAGGAAGAAGAAGAAGCACCAAAGCCTAAACCTAAAAATCCACTTGATCTGTTACCTCCCAGTCCGATGATACTGGATGAATGGAAACGGCTCTACTCTAATACAAAGACCAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGATCCGGAGGGTTACTCTCTTTGGTTCTGTGATTACAAATACAACAATGAGAACACCGTTTCCTTCGTTACACTGAACAAGGTCAGTGGTTTTCTTCAGCGCATGGATCTTGCCAGAGTTCTAGATGCGCTTGGAGAGTCCCTTCCATGCGCCAAGTATGATTCATGGATGGTGTATATGCCTGAAGGTGAATTCTTGTCACGCATTGGCCCAACTGAGTTTTTCAAGGATCTCGAGAAGTACGGAGGTCCAAATGCTGTTCAGGAGTGGAGAAAACTTCTGGATGCAGTACTTCCAATGTCGGCTGCAGCAATGGCTCTGCCTCCTCTGTCGATCCGAGGGGATTTGGGAGTTATTTCTACTGCTGCAGCTAGATATGCTCCCGCTCTATTGAAATCATTCTTCCAAATGGGGCCTCGAGGTGCTCTTGGTGCTACCAAACTTCTTAGACCTTTCTCTGAAATCGTGGACTCATTAGAACTGAAAGACCAGTTTATACGTAATTGGATTGACCTTCTAGCTTTCTTGCTTGCTGGGGTCAAATCCAATGTTTACATGTTTGCAGAATGGTACAAGCCAGGTTGTTGTCTTGAGTACCCTCTTCATGGAACTGGTGCTCTTATTGATGCTCTCGTTCGTGGGTTGGATAAGTTTGGAGGGCGTCTCTCTCTACGAAGTCATGTCGATAAAGTAGTCGTAGAGAATAGCCGTGCCGTTGGAGTCAGGCTTCGAAGTGGTCAATTTATACGAGCAAAGAAGGCTGTTGTGAGCAATGCAAGCATGTGGGACACCATAGCTTTGTTACCCAAAGAAGCTGTTCCCAAAGATTATGCAGAGCAGGTTAAGATGACACCACAGTGTGAATCATTCATGCATCTCCATTTGGGGTTTGATGCAGAAGTTGCTCGGAAAGACATGGGAATCCATCACATTGTTATAAATGATTGGGAAAGAGGCGTCGATGCAGATCAGAATGTAGTGTTAATATCAGTCCCAAGTGTGCTTAGTCCAGACCTCGCACCTCCCGGGAAGCACGTTTTGCACGCTTACACACCAGGAACTGAACCATATGGACTTTGGGAAGGACTTGATCGAACAAGTCCCGAATACAAAAATCTCAAAGCCGAACGATCCGAGACAATCAGCTACATTGCAGAACATGTGGTTGGAACGGGCTCCTTTGGTGTTGTTTTCCAAGCAAAATGTAGAGAAACGGGAGAAATTGTTGCTATCAAGAAAGTTCTCCAAGACAAGAGATACAAGAATCGGGAATTGCAAATTATGCAAATGGTGGACCATCCCAACGTTGTGGCACTTAAACATTGTTTCTTTTCAACGACCGACAAAGAAGAGTTGTACCTGAATCTTGTTCTTGAATTTGTTCCTGCAACTGTTAACCGAATTGCAAGGAACTATAGTAGGATCAATCAGAGAATGCCCCTCATATATGTTAAACTTTATACCTATCAAATATGCAGGGCGCTTGCATATATACATAATTGTATCGGTATTTGCCATCGTGATATCAAGCCACAGAACCTGCTTGTGAATCCACACACACATCAGCTCAAACTTTGTGATTTCGGGAGTGCAAAAGTGCTCGTCAAAGGAGAGCTTAATGTTTCGTACATCTGCTCGAGATATTACCGTGCTCCAGAACTCATATTCGGTGCCACCGAGTACACAACTGCCATAGATATATGGTCTACAGGATGTGTGATGGCCGAACTACTTCTCGGACAGCCTTTGTTTCCTGGTGAAAGTGGGGTTGACCAGCTGGTTGAGATCATTAAGGTTTTGGGGACGCCAACCAGAGAGGAGATCAAATGTATGAATCCAAACTATACTGAATTCAAGTTCCCACAGATAAAGCCTCATCCATGGCATAAGGTTTTTCAAAAACGTTTACCCCCAGAAGCGGTCGACCTCGTCTGCCGATTTTTCCAGTATTCACCGAATTTGCGGTGCACTGCGTTGGAAGCTTGTATCCATCCTTTCTTCGATGAGTTGAGGGACCCGAGCACCCGGCTTCCGAACGGCCGGCCGCTTCCTCCTCTGTTTAATTTCAAAGCTCAGGAGTTGACAGGGTTAGAGGCAGATGTGGTGAATCGAGTTATCCCGGAGCATGCTCGGAAGCAGAACTTGTTCATGGCTTTGCACGCGTGA | 2883 | 44.92 | MGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVSRLKTHCNLFASSPIDYGHVEQWIDFASLEIDVHILTWFRPRWGYAPYLPPVEEAAISALKRALGALNLMTKSFTSEFPHVERYFWTLVNQPNFKKVLGDVKQTEAVPPIQSAKKPSQPKEPAKPKHKDETKKEVKKEETKEKAKVEAGEEEEEAPKPKPKNPLDLLPPSPMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNNENTVSFVTLNKVSGFLQRMDLARVLDALGESLPCAKYDSWMVYMPEGEFLSRIGPTEFFKDLEKYGGPNAVQEWRKLLDAVLPMSAAAMALPPLSIRGDLGVISTAAARYAPALLKSFFQMGPRGALGATKLLRPFSEIVDSLELKDQFIRNWIDLLAFLLAGVKSNVYMFAEWYKPGCCLEYPLHGTGALIDALVRGLDKFGGRLSLRSHVDKVVVENSRAVGVRLRSGQFIRAKKAVVSNASMWDTIALLPKEAVPKDYAEQVKMTPQCESFMHLHLGFDAEVARKDMGIHHIVINDWERGVDADQNVVLISVPSVLSPDLAPPGKHVLHAYTPGTEPYGLWEGLDRTSPEYKNLKAERSETISYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMVDHPNVVALKHCFFSTTDKEELYLNLVLEFVPATVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGELNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKAQELTGLEADVVNRVIPEHARKQNLFMALHA | 960 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 841934 | 856931 | - | Bma006903.2 | Bma12g00028 | 91454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00028 | 960 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 743 | 755 | IPR008271 | GO:0004672|GO:0006468 | |
Bma12g00028 | 960 | SUPERFAMILY | Protein kinase-like (PK-like) | 621 | 931 | IPR011009 | - | |
Bma12g00028 | 960 | SUPERFAMILY | eEF1-gamma domain | 199 | 278 | IPR036433 | GO:0003746|GO:0006414 | |
Bma12g00028 | 960 | MobiDBLite | consensus disorder prediction | 158 | 199 | - | - | |
Bma12g00028 | 960 | Gene3D | Phosphorylase Kinase; domain 1 | 614 | 701 | - | - | |
Bma12g00028 | 960 | ProSitePatterns | Protein kinases ATP-binding region signature. | 628 | 652 | IPR017441 | GO:0005524 | |
Bma12g00028 | 960 | PANTHER | SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED | 616 | 957 | - | - | |
Bma12g00028 | 960 | SUPERFAMILY | Thioredoxin-like | 5 | 43 | IPR036249 | - | |
Bma12g00028 | 960 | SUPERFAMILY | GST C-terminal domain-like | 47 | 147 | IPR036282 | - | |
Bma12g00028 | 960 | SUPERFAMILY | FAD/NAD(P)-binding domain | 356 | 590 | IPR036188 | - | |
Bma12g00028 | 960 | Gene3D | Glutaredoxin | 1 | 39 | - | - | |
Bma12g00028 | 960 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 199 | 278 | IPR001662 | GO:0003746|GO:0006414 | |
Bma12g00028 | 960 | MobiDBLite | consensus disorder prediction | 145 | 207 | - | - | |
Bma12g00028 | 960 | Pfam | Protein kinase domain | 624 | 906 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma12g00028 | 960 | Gene3D | - | 46 | 108 | - | - | |
Bma12g00028 | 960 | Gene3D | - | 109 | 151 | - | - | |
Bma12g00028 | 960 | CDD | STKc_GSK3 | 617 | 909 | IPR039192 | - | |
Bma12g00028 | 960 | SMART | EF1G_2 | 198 | 301 | IPR001662 | GO:0003746|GO:0006414 | |
Bma12g00028 | 960 | ProSiteProfiles | Protein kinase domain profile. | 622 | 906 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma12g00028 | 960 | Pfam | Elongation factor 1 gamma, conserved domain | 198 | 278 | IPR001662 | GO:0003746|GO:0006414 | |
Bma12g00028 | 960 | CDD | GST_C_EF1Bgamma_like | 55 | 144 | - | - | |
Bma12g00028 | 960 | Pfam | Glutathione S-transferase, N-terminal domain | 5 | 41 | IPR004045 | - | |
Bma12g00028 | 960 | SMART | serkin_6 | 622 | 906 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma12g00028 | 960 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 199 | 285 | IPR036433 | GO:0003746|GO:0006414 | |
Bma12g00028 | 960 | Gene3D | Transferase(Phosphotransferase) domain 1 | 702 | 950 | - | - | |
Bma12g00028 | 960 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 47 | IPR004045 | - | |
Bma12g00028 | 960 | PANTHER | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 616 | 957 | - | - | |
Bma12g00028 | 960 | Gene3D | - | 437 | 524 | IPR036188 | - | |
Bma12g00028 | 960 | Coils | Coil | 171 | 191 | - | - | |
Bma12g00028 | 960 | Gene3D | - | 525 | 591 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma05g00922 | Bma12g00028 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma10g00941 | Bma-Chr10:19957040 | Bma12g00028 | Bma-Chr12:841934 | 0 | dispersed | |
Bma12g00028 | Bma-Chr12:841934 | Bma13g00100 | Bma-Chr13:1046075 | 0 | dispersed | |
Bma04g01523 | Bma-Chr4:51245589 | Bma12g00028 | Bma-Chr12:841934 | 3.11E-27 | transposed | |
Bma05g00922 | Bma-Chr5:47122578 | Bma12g00028 | Bma-Chr12:841934 | 0 | transposed | |
Bma12g00028 | Bma-Chr12:841934 | Bma05g00920 | Bma-Chr5:47112617 | 1.24E-150 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66801 | PF00069 | Pkinase | 2.90E-62 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00028 | K03083 | - | jre:108983720 | 686.797 |