Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00031 GCGGACGAGATGGAGCAGGGGCTTCAGAATGATGTTGAAATTGAGGGTTTTGAGAGGGGCGGCTCTGATAAAGAGTCTGTCGTTTTGACGATGAATGAACCTCTGTTGCTTCGGAGAAGAAGCAGCATCGGCAAAACCTCTCAGCTCGCCATTGTTGGCGCCAATGTCTGCCCCATTGAAAGCCTCGACTACGAGATCGCAGAGAATGATCTTTTCATGCAGGACTGGAGATCCAGAACAAAGACAGAGATATTTCAATATCTTGTCCTCAAATGGACGCTTGCCCTGCTTATTGGTGTCAGCACAGGGCTTGTTGGCTTCTTCAATAATCTTGCTGTCGAAAATATAGCTGGGTTCAAACTACTGCTTGCTAACAACTTCATGCTTCAGAACAAGTTTTATCAGGCATTTGCAGTACTTGCTAGTTGCAACATGGTTCTGGCTATTGCTGCATCTGCATTATGCGCCTACATTGCACCTGCAGCTGCAGGCTCTGGCATTCCAGAAGTGAAAGCGTACCTCAATGGGATAGATGCTCATTCCATGTTGGCCCCGACTACCCTCTTTGTGAAGATCTTTGGTTCCATTTTAGGTGTTGCTGCTGGATTCGTTGTGGGTAAGGAAGGACCTATGGTACATACTGGTGCATGCATAGCTTCTTTACTTGGACAAGGAGGCTCTAGAAAATACCACTTGACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGATAGGCGGGATTTGATCACCTGTGGTGCTGCTGCTGGAGTAGCAGCTGCCTTCCGTGCCCCAGTTGGTGGCGTTCTCTTTGCCCTTGAAGAAGCTGCTTCATGGTGGAGGAATGCTCTTCTTTGGAGAACCTTCTTTACAACTGCCGTAGTAGCAGTTGTGTTGAAAGGTTTCACAGGGTTTTGTCGGGGAGGAAAATGTGGACTTTTTGGCGAGGGAGGCCTAATTATGTATGATGTTAATTCAGAAAAAGTTTTGTACCGCACCCCAGATTTACTGGCTCTGATATTACTAGGAGTTATTGGTGGTGTCTTTGGAAGCCTTTACAATTATTTTGTCGACAAGGTTCTCCGCACTTACAGCATCGTCAATGAGAGAGGTCCTTCCCTTAAAATCCTACTTGTTGTTGCCATATCTCTATTAACTTCTTGTTGCTCTTACGGTCTTCCATGGCTCTCTATCTGCATACCTTGCCCTGCTCACTTGGAGGATCAATGTCCCACCATAGGTCGCACTGGTAATTACAAGAGCTTTCAGTGCCCTCCTAACCATTACAATGATCTTGCTTCGCTTTTCCTGAATACCAATGATGATGCAATTCGCAACCTGCTGAGCTCTGCTTCTGATAAGGAATTTCACCTCTCAACCCTTGCAATTTTCTTTTCTGCCATCTACTTTCTTGGCATTATCACTTATGGAATTGCTATTCCATCTGGCCTCTTCATTCCTGTCATACTTGCTGGGTCATCTTATGGGCGCCTAGTTGGGACACTTGTTGGCTCTCTATCCAATCTTGATGTGGGTCTCTTTGCCCTCCTCGGAGCTGCATCTTTTCTTGGCGGCACCATGAGAATGACTGTTTCTCTATGCGTCATCCTTCTTGAACTTACTAATGATCTTTTGATGCTACCATTGGTGATGCTTGTTCTTCTAATTTCAAAAACTGTAGCTGATTGTTTTAACAAAGGTGTCTATGACCAAATTGTCAAAATGAAGGGGTTGCCATACATGGAAGCCCATGCAGAGCCATATATGAGACACTTGGTTGTCAGTGATGTTGTATCTGGTCCGCTGATTACATTTTCTGGAGTAGAGAAGGTTGGAACCTTAATGAATGCTTTGAAGATGACAAAACATAATGGATTCCCTGTTATCGATGAGCCCCCAATATCGGATTCTCCGGAATTGTGTGGGCTTGTTCTGAGGTCTCATCTTCTTGTGTTGCTCAAAGGGAAGAATTTCACAAAGCATAAAGGGACTAGTGGATCAGCAATAATGAGGAGATTTACTGCATATGATTTTGCAAAAGCAGGATCAGGTAAAGGGGTGAAGATGGGGGACTTGGATATCAAAGTGGATGAGATGGAGATGTATCTAGATCTCCATCCTATTACAAATACATCCCCTTATACCGTAGTGGAAACAGTGTCTCTTGCTAAAGCAGCTATTCTCTTTCGCGACCTTGGCTTACGTCACTTATTGGTGGTGCCAAAGAAACAAGGGCGGCCTCCAATTGTCGGAATCCTTACACGACATGACTTTATGCGGGAGCACGTGCTAGGACTTTACCCACATTTCAATACTGATAAG 2322 44.83 ADEMEQGLQNDVEIEGFERGGSDKESVVLTMNEPLLLRRRSSIGKTSQLAIVGANVCPIESLDYEIAENDLFMQDWRSRTKTEIFQYLVLKWTLALLIGVSTGLVGFFNNLAVENIAGFKLLLANNFMLQNKFYQAFAVLASCNMVLAIAASALCAYIAPAAAGSGIPEVKAYLNGIDAHSMLAPTTLFVKIFGSILGVAAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRNALLWRTFFTTAVVAVVLKGFTGFCRGGKCGLFGEGGLIMYDVNSEKVLYRTPDLLALILLGVIGGVFGSLYNYFVDKVLRTYSIVNERGPSLKILLVVAISLLTSCCSYGLPWLSICIPCPAHLEDQCPTIGRTGNYKSFQCPPNHYNDLASLFLNTNDDAIRNLLSSASDKEFHLSTLAIFFSAIYFLGIITYGIAIPSGLFIPVILAGSSYGRLVGTLVGSLSNLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLVMLVLLISKTVADCFNKGVYDQIVKMKGLPYMEAHAEPYMRHLVVSDVVSGPLITFSGVEKVGTLMNALKMTKHNGFPVIDEPPISDSPELCGLVLRSHLLVLLKGKNFTKHKGTSGSAIMRRFTAYDFAKAGSGKGVKMGDLDIKVDEMEMYLDLHPITNTSPYTVVETVSLAKAAILFRDLGLRHLLVVPKKQGRPPIVGILTRHDFMREHVLGLYPHFNTDK 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 877510 882049 + Bma030483 Bma12g00031 91457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00031 774 SUPERFAMILY CBS-domain pair 585 761 IPR046342 -
Bma12g00031 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 25 772 - -
Bma12g00031 774 SUPERFAMILY Clc chloride channel 68 583 IPR014743 -
Bma12g00031 774 Gene3D - 582 767 IPR046342 -
Bma12g00031 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 25 772 - -
Bma12g00031 774 ProSiteProfiles CBS domain profile. 708 772 IPR000644 -
Bma12g00031 774 Pfam CBS domain 710 760 IPR000644 -
Bma12g00031 774 Pfam Voltage gated chloride channel 148 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma12g00031 774 Gene3D Clc chloride channel 83 581 - -
Bma12g00031 774 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma12g00031 774 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma12g00031 774 PRINTS Plant CLC chloride channel signature 432 448 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma12g00031 774 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma12g00031 774 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bma12g00031 774 CDD ClC_6_like 60 581 - -
Bma12g00031 774 CDD CBS_pair_voltage-gated_CLC_euk_bac 584 761 - -
Bma12g00031 774 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma12g00031 774 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma12g00031 774 PRINTS Chloride channel signature 568 582 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma12g00031 774 PRINTS Chloride channel signature 530 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma12g00031 774 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma12g00031 774 PRINTS Chloride channel signature 480 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma12g00031 774 PRINTS Chloride channel signature 512 528 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma12g00031 774 SMART cbs_1 712 763 IPR000644 -
Bma12g00031 774 SMART cbs_1 601 654 IPR000644 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00915 Bma12g00031 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00307 Bma-Chr1:2527778 Bma12g00031 Bma-Chr12:877510 0 dispersed
Bma04g00792 Bma-Chr4:9004903 Bma12g00031 Bma-Chr12:877510 1.45E-10 dispersed
Bma12g00031 Bma-Chr12:877510 Bma14g01376 Bma-Chr14:25654138 0 dispersed
Bma12g00031 Bma-Chr12:877510 Bma05g00915 Bma-Chr5:47078947 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00031 K05016 - jre:108988922 1217.99