Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00038 ATGGAAGGAATTCCCCACCCTATACCTCGAACTGTGGAGGAGGTCTTCTGTGACTTCAAAGGCAGACGTTCTGGCTTGATCAAAGCTCTTACCACTGATGTTGAGAAATTCTTTCAGCAATGCGATCCTGACGTTATTGGTATTCTGTTTGCAGAGAAGGAAAACTTATGTCTATATGGACTTCCAAATGAGACGTGGGAAGTTAATCTGCCAGTGGAGGAGGTTCCCCCTGAGCTTCCTGAGCCAGCATTAGGCATAAACTTTGCTAGGGATGGTATGCAGGAGAAGGATTGGCTATCATTGGTGGCTGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTTTATTTTGGTGCACGCTTTGGTTTTGGTAAGAATGAAAGGAAGAGACTTTTCCAGATGATAAATGATCTACCAACCATATTTGAAGTTGTGACAGGAAATGCTAAGCATCCAAAGGAGCAGTCGGCAACTCATAATAACAGCAGCAAAAGCAAATCCAGTGGGAAGATACAATCTCGGCCATCTGAGTCACAGAGCAAGGGAGTGAAGATGTCTCCACCTCCCAAAGAAGATGAAGACAGTGGGGAGGAAGAAGAAGATGACGAGCAGGGTGCAACATGTGGGGCGTGTGGGGATAACTACGGAAATGATGAGTTTTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCATGGGAAATGCGTTTCGGGGGCATCTCCATTGCTTTTGAAACTCAAGAACAAGAATCGATCTTATTCATCCCCAAAATTTTTGAGAGGTGGTAAAAAAGAGGACTCTTCTTATTCATATAGCACACCGCAGGAAGACCTCTTTGAAGTTGATGCCACTAACAAGAAAGGAATCGAGAGAATTAAATATTTATTCAAAGAAATATCGAAGGCCCCGGCATCTGCCTTCACGAGATACAAGGTTTTTTTGATTGAAGAGTGTCACTTGTTACCGCCTAAGACGTGGATCACGTTTCTCAAATTTCTTGAAGAACCTCCACATCGTGTTGTTTTGGTGTTCATGACCACTGATCTTGACAGTGTTCCCCGTACTATACAATCAAGATGTCAGAAGTATATATTTAACAAAATTAAAGATGGGGAAATAATTGACAGGTTAAAGAAAATTTGTAAGGAGGAGAGCTTGGAGATTGAATTGGATGCGTTGGATTTGATAGCGATGAATGCAGATGGTTCCCTTCGAGATGCAGAAACCATGCTAGAGCAGCTGAGTTTGCTTGGCAAAGGAATCACCACCTCTCTCGTCAATGAACTAGTTGGGGTTGTTTCAGACGAAAAATTGCTGGAACTTTTGGCATTGGCAATGTCATCGAACACTGCTGAAACAGTTAAACAAGCCAGAGAACTTATGGACTCGGGGGTTGATCCATTAGTTTTGATGTCCCAACTGGCTAGCCTGATTATGGATATTATTGCTGGAACTTACAACATTATTGTTGCCAAAAAAAATTCCTTATTATTTGGTGGACAAAGCTTAAAGGAAACCGAACTGGAGAGATTAAAGCATGCTTTAAAGCTTCTTTCAGAGGCTGAGAAGCAGCTAAGGGTTTCAAGTGAACGCTCAACATGGTTCACAGCAACTTTGTTACAGCTGGGTTCTGTACCATCTCCAGATCTAACTCAGTCAAGCAGCAGGAGACAGAGTGGAAAGATTACTGAAGGTGATCCATCAAGTTCTTCAAAAGAGGCTACTGTTTACAAACGAAAGCCAGATGCTCAGCATATGCTTCTGGACTCAAGTTCTCCTTCTTCTATGTGCAACGTTGTGAATGGAAATCATAATTTACAGGGGGAGTTATTGTCAAAAATGGACACTGCCAACGATAATTCAAGCCAATTCACGGATGATGGAGACTTGGACACATCACAGAAAGATAGCGTGGTTAGAAATATGATCTTTAGGCGTAAAAGTAAAGAAAAGTTAAGTGACATCTGGGTGCTGTGCATTGAGAAGTGTCACTCAAAGGCTTTGAGACAGCTCCTACTCAGTCATGGGAATCTTTTTTCCATCTCTGAAGCTGAAGGTATTTTGATTGCTTACGTCGCATTTGGGGATGAAGACATCAAATCTAGAGCTGAAAGGTTTTTGAGCAGCATCACAAACGCCATGGAGATGGTTATGAAATGTAATGTAGAGGTTAGAATTATCCTCCTCCCAGAAGGGGATGCTTCTATTAATAGTTTGACCTCAGTTGAGCTAGCAGAACAACTAAAACAACAAGCAGAGACCATTGACAGAGAAAGGAAGTTTGTCAAAGGTACAGCAACAAGTACCTATACTAATCATTCTAGTTTGTTGGATGGAGCGTATAGATCAACCTCCAATTCATCAGAGTCAGTCCCTGAAGGAAATGCTCAAAAAAATGTCATGAGAAAGAAGAGACAGGAAGTTCCAATGCGGAGAATAGAATCTATTATTCGTGAACAAAAATTAGAAACTGCATGGCTGCAAGCCGTCGAAAAAGGAACACCTGGATCATTGAGTCGATCGAAACCTGAGAAGAATCAGGTCCTGCCTCAAGATGGGACGTTTGATGATCAAACGGAAACAAAGAATTCCTCTGGACATTGGAAAGATGAACCAAATCAGGAGCTCAAAATGGATGAAAGAATCCTCCAGAAAGATCAAAATGGTAGAGGGATAGGTCGATATCCAATGTCTCCAAGTCTATTGCATGGTGGCAACCTTGGTGCCAATGCCAATAAAGATTACTTGGAATATGAATCAGGGCCTGCAAATGGAGGCTGTGGTGCATTTTTATGCTGGAATAACCCCAAACCTCAGAGAAGGGGAAAGCCGGTAAGGGGAAATCCTGTTCAGGCACGCAAAGATAGACGATTCTCATTGTTTGGCGAGTGTGGCAAGTCCAAGAAATCAAATCGGAGAAGCAACATCGGAAAAATGACTGGTCGTCAGAACTTATCTCTGTGA 2964 42.24 MEGIPHPIPRTVEEVFCDFKGRRSGLIKALTTDVEKFFQQCDPDVIGILFAEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKHPKEQSATHNNSSKSKSSGKIQSRPSESQSKGVKMSPPPKEDEDSGEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVSGASPLLLKLKNKNRSYSSPKFLRGGKKEDSSYSYSTPQEDLFEVDATNKKGIERIKYLFKEISKAPASAFTRYKVFLIEECHLLPPKTWITFLKFLEEPPHRVVLVFMTTDLDSVPRTIQSRCQKYIFNKIKDGEIIDRLKKICKEESLEIELDALDLIAMNADGSLRDAETMLEQLSLLGKGITTSLVNELVGVVSDEKLLELLALAMSSNTAETVKQARELMDSGVDPLVLMSQLASLIMDIIAGTYNIIVAKKNSLLFGGQSLKETELERLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSVPSPDLTQSSSRRQSGKITEGDPSSSSKEATVYKRKPDAQHMLLDSSSPSSMCNVVNGNHNLQGELLSKMDTANDNSSQFTDDGDLDTSQKDSVVRNMIFRRKSKEKLSDIWVLCIEKCHSKALRQLLLSHGNLFSISEAEGILIAYVAFGDEDIKSRAERFLSSITNAMEMVMKCNVEVRIILLPEGDASINSLTSVELAEQLKQQAETIDRERKFVKGTATSTYTNHSSLLDGAYRSTSNSSESVPEGNAQKNVMRKKRQEVPMRRIESIIREQKLETAWLQAVEKGTPGSLSRSKPEKNQVLPQDGTFDDQTETKNSSGHWKDEPNQELKMDERILQKDQNGRGIGRYPMSPSLLHGGNLGANANKDYLEYESGPANGGCGAFLCWNNPKPQRRGKPVRGNPVQARKDRRFSLFGECGKSKKSNRRSNIGKMTGRQNLSL 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 934886 944839 - Bma006912.1 Bma12g00038 91464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00038 987 MobiDBLite consensus disorder prediction 776 807 - -
Bma12g00038 987 Coils Coil 745 765 - -
Bma12g00038 987 PANTHER PROTEIN STICHEL-LIKE 1 275 909 - -
Bma12g00038 987 Gene3D - 370 431 - -
Bma12g00038 987 Coils Coil 504 531 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 832 873 - -
Bma12g00038 987 Pfam DNA polymerase III subunits gamma and tau domain III 422 483 IPR022754 GO:0003887
Bma12g00038 987 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 275 909 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 192 206 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 965 987 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 839 861 - -
Bma12g00038 987 SUPERFAMILY FYVE/PHD zinc finger 197 238 IPR011011 -
Bma12g00038 987 MobiDBLite consensus disorder prediction 150 206 - -
Bma12g00038 987 Gene3D - 245 368 IPR027417 -
Bma12g00038 987 Pfam DNA polymerase III, delta subunit 285 368 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 938 957 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 546 572 - -
Bma12g00038 987 SUPERFAMILY post-AAA+ oligomerization domain-like 439 540 IPR008921 GO:0003677|GO:0006260
Bma12g00038 987 MobiDBLite consensus disorder prediction 776 795 - -
Bma12g00038 987 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 244 IPR013083 -
Bma12g00038 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 415 IPR027417 -
Bma12g00038 987 MobiDBLite consensus disorder prediction 546 578 - -
Bma12g00038 987 CDD HLD_clamp_pol_III_gamma_tau 368 431 IPR045085 -
Bma12g00038 987 Pfam Alfin 11 146 IPR021998 GO:0006355|GO:0042393
Bma12g00038 987 SMART PHD_3 207 259 IPR001965 -
Bma12g00038 987 MobiDBLite consensus disorder prediction 151 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00038 - - - mcha:111008253 894.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00818 Bma-Chr7:26000964 Bma12g00038 Bma-Chr12:934886 5.97E-67 dispersed
Bma08g01024 Bma-Chr8:49360028 Bma12g00038 Bma-Chr12:934886 1.65E-69 dispersed
Bma11g00975 Bma-Chr11:43929644 Bma12g00038 Bma-Chr12:934886 2.90E-66 dispersed
Bma06g00479 Bma-Chr6:22490114 Bma12g00038 Bma-Chr12:934886 1.93E-24 transposed
Bma12g00038 Bma-Chr12:934886 Bma05g00910 Bma-Chr5:47011904 1.89E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1241 Blo02g01189 Blo03g00276 . Bda08g00427 . . . . . . . . . . . Cpe01g00798 Cpe14g00652 . . . . . . . . . . . . . . Cone3ag0884 . . . . . . . . . . . . . . Bma12g00038 Sed14g1532 Cmo04g00941 Cmo16g00815 . . . . . . Bhi11g00927 Tan01g1499 Cmetu04g3053 . Hepe07g0555 Mch10g0596 . Cla10g00713 Cam10g0704 Cec10g0732 Cco10g0715 Clacu10g0741 Cmu10g1555 . . Csa03g00675 Chy06g01614 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00038 . 1 236 Alfin-like Transcription Factor Family AT1G14510 83.9 3.4e-101 364.8
Bma02g00545 CCT,ECH 1 247 Alfin-like Transcription Factor Family AT1G14510 68.3 2.1e-95 345.5
Bma01g00252 CCT 1 220 Alfin-like Transcription Factor Family AT1G14510 69.8 7.9e-90 327.0
Bma06g00890 . 1 250 Alfin-like Transcription Factor Family AT1G14510 68.4 6.9e-86 313.9
Bma08g01024 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.0 1.6e-79 292.7
Bma01g02201 CCT,ECH 1 237 Alfin-like Transcription Factor Family AT1G14510 56.0 2.2e-76 282.3
Bma01g01743 . 7 236 Alfin-like Transcription Factor Family AT1G14510 57.1 7.1e-75 277.3
Bma05g00910 . 1 166 Alfin-like Transcription Factor Family AT1G14510 78.9 2.0e-64 242.7
Bma04g00716 . 4 221 Alfin-like Transcription Factor Family AT1G14510 56.6 1.5e-61 233.0
Bma01g01801 . 1 201 Alfin-like Transcription Factor Family AT1G14510 57.5 5.0e-60 228.0
Bma02g00545 CCT,ECH 1 250 Alfin-like Transcription Factor Family AT5G26210 71.0 2.5e-104 375.2
Bma06g00890 . 1 252 Alfin-like Transcription Factor Family AT5G26210 79.5 1.0e-100 363.2
Bma01g00252 CCT 1 222 Alfin-like Transcription Factor Family AT5G26210 73.6 2.0e-96 349.0
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT5G26210 61.8 2.0e-85 312.4
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT5G26210 57.9 4.0e-81 298.1
Bma01g01743 . 4 238 Alfin-like Transcription Factor Family AT5G26210 58.6 2.0e-80 295.8
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G26210 70.0 5.4e-78 287.7
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT5G26210 55.1 1.7e-63 239.6
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT5G26210 57.8 3.7e-63 238.4
Bma11g00599 CCT 1 210 Alfin-like Transcription Factor Family AT5G26210 51.2 1.0e-60 230.3
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G26210 65.9 3.0e-52 202.2
Bma01g00252 CCT 3 222 Alfin-like Transcription Factor Family AT3G42790 76.0 2.0e-98 355.5
Bma02g00545 CCT,ECH 3 250 Alfin-like Transcription Factor Family AT3G42790 68.3 1.2e-95 346.3
Bma06g00890 . 3 252 Alfin-like Transcription Factor Family AT3G42790 78.0 6.2e-95 344.0
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT3G42790 58.5 7.3e-80 293.9
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT3G42790 58.2 1.2e-79 293.1
Bma01g01743 . 6 238 Alfin-like Transcription Factor Family AT3G42790 56.4 7.6e-77 283.9
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT3G42790 67.5 4.9e-76 281.2
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT3G42790 52.9 2.6e-61 232.3
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT3G42790 55.1 3.4e-61 231.9
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G42790 61.3 3.9e-49 191.8
Bma08g01024 . 1 240 Alfin-like Transcription Factor Family AT5G05610 79.7 5.7e-114 407.1
Bma01g01743 . 4 239 Alfin-like Transcription Factor Family AT5G05610 74.3 1.6e-103 372.5
Bma02g00545 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT5G05610 66.4 5.8e-90 327.4
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT5G05610 68.9 8.6e-86 313.5
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT5G05610 73.7 2.8e-84 308.5
Bma01g00252 CCT 4 222 Alfin-like Transcription Factor Family AT5G05610 60.0 3.1e-83 305.1
Bma06g00890 . 4 252 Alfin-like Transcription Factor Family AT5G05610 57.6 3.2e-80 295.0
Bma01g02201 CCT,ECH 6 240 Alfin-like Transcription Factor Family AT5G05610 55.2 1.1e-72 270.0
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G05610 61.1 4.6e-71 264.6
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G05610 59.4 1.8e-46 183.0
Bma08g01024 . 43 240 Alfin-like Transcription Factor Family AT3G11200 82.1 2.0e-95 345.5
Bma01g01743 . 42 239 Alfin-like Transcription Factor Family AT3G11200 76.2 2.4e-85 312.0
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT3G11200 69.3 1.2e-84 309.7
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT3G11200 74.0 3.0e-83 305.1
Bma02g00545 CCT,ECH 44 249 Alfin-like Transcription Factor Family AT3G11200 62.6 8.9e-72 266.9
Bma01g00252 CCT 44 222 Alfin-like Transcription Factor Family AT3G11200 61.1 1.6e-68 256.1
Bma06g00890 . 44 252 Alfin-like Transcription Factor Family AT3G11200 60.3 1.2e-65 246.5
Bma12g00038 . 52 236 Alfin-like Transcription Factor Family AT3G11200 63.2 3.0e-59 225.3
Bma01g02201 CCT,ECH 44 240 Alfin-like Transcription Factor Family AT3G11200 53.5 2.1e-57 219.2
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G11200 57.7 6.4e-46 181.0
Bma11g00599 CCT 34 210 Alfin-like Transcription Factor Family AT3G11200 52.0 4.6e-44 174.9
Bma12g00038 . 1 169 Alfin-like Transcription Factor Family AT2G02470 82.2 7.2e-75 277.3
Bma01g00252 CCT 1 146 Alfin-like Transcription Factor Family AT2G02470 78.8 5.7e-64 241.1
Bma06g00890 . 1 155 Alfin-like Transcription Factor Family AT2G02470 74.8 1.1e-62 236.9
Bma02g00545 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 1.4e-62 236.5
Bma08g01024 . 8 153 Alfin-like Transcription Factor Family AT2G02470 67.8 3.2e-54 208.8
Bma01g02201 CCT,ECH 1 145 Alfin-like Transcription Factor Family AT2G02470 66.2 5.6e-51 198.0
Bma01g01743 . 7 154 Alfin-like Transcription Factor Family AT2G02470 63.6 8.1e-50 194.1
Bma04g00716 . 4 116 Alfin-like Transcription Factor Family AT2G02470 69.8 2.2e-39 159.5
Bma06g00890 . 3 153 Alfin-like Transcription Factor Family AT5G20510 79.5 5.8e-69 257.3
Bma02g00545 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 7.1e-67 250.4
Bma01g00252 CCT 3 139 Alfin-like Transcription Factor Family AT5G20510 81.0 3.0e-65 245.0
Bma12g00038 . 3 173 Alfin-like Transcription Factor Family AT5G20510 69.9 1.6e-63 239.2
Bma08g01024 . 7 172 Alfin-like Transcription Factor Family AT5G20510 59.5 1.3e-52 203.0
Bma01g01743 . 6 144 Alfin-like Transcription Factor Family AT5G20510 65.0 1.9e-51 199.1
Bma01g02201 CCT,ECH 1 164 Alfin-like Transcription Factor Family AT5G20510 61.2 3.2e-51 198.4
Bma04g00716 . 4 131 Alfin-like Transcription Factor Family AT5G20510 59.0 5.3e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004154 1 1 4 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58078 PF12165 Alfin 2.50E-64 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00038 Bma_Chr12 FPKM 26.863237 29.449278 22.722223 23.155621 29.815718 29.885151 27.896902 24.688631 24.047058 23.665195