Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00038 ATGGAAGGAATTCCCCACCCTATACCTCGAACTGTGGAGGAGGTCTTCTGTGACTTCAAAGGCAGACGTTCTGGCTTGATCAAAGCTCTTACCACTGATGTTGAGAAATTCTTTCAGCAATGCGATCCTGACGTTATTGGTATTCTGTTTGCAGAGAAGGAAAACTTATGTCTATATGGACTTCCAAATGAGACGTGGGAAGTTAATCTGCCAGTGGAGGAGGTTCCCCCTGAGCTTCCTGAGCCAGCATTAGGCATAAACTTTGCTAGGGATGGTATGCAGGAGAAGGATTGGCTATCATTGGTGGCTGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTTTATTTTGGTGCACGCTTTGGTTTTGGTAAGAATGAAAGGAAGAGACTTTTCCAGATGATAAATGATCTACCAACCATATTTGAAGTTGTGACAGGAAATGCTAAGCATCCAAAGGAGCAGTCGGCAACTCATAATAACAGCAGCAAAAGCAAATCCAGTGGGAAGATACAATCTCGGCCATCTGAGTCACAGAGCAAGGGAGTGAAGATGTCTCCACCTCCCAAAGAAGATGAAGACAGTGGGGAGGAAGAAGAAGATGACGAGCAGGGTGCAACATGTGGGGCGTGTGGGGATAACTACGGAAATGATGAGTTTTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCATGGGAAATGCGTTTCGGGGGCATCTCCATTGCTTTTGAAACTCAAGAACAAGAATCGATCTTATTCATCCCCAAAATTTTTGAGAGGTGGTAAAAAAGAGGACTCTTCTTATTCATATAGCACACCGCAGGAAGACCTCTTTGAAGTTGATGCCACTAACAAGAAAGGAATCGAGAGAATTAAATATTTATTCAAAGAAATATCGAAGGCCCCGGCATCTGCCTTCACGAGATACAAGGTTTTTTTGATTGAAGAGTGTCACTTGTTACCGCCTAAGACGTGGATCACGTTTCTCAAATTTCTTGAAGAACCTCCACATCGTGTTGTTTTGGTGTTCATGACCACTGATCTTGACAGTGTTCCCCGTACTATACAATCAAGATGTCAGAAGTATATATTTAACAAAATTAAAGATGGGGAAATAATTGACAGGTTAAAGAAAATTTGTAAGGAGGAGAGCTTGGAGATTGAATTGGATGCGTTGGATTTGATAGCGATGAATGCAGATGGTTCCCTTCGAGATGCAGAAACCATGCTAGAGCAGCTGAGTTTGCTTGGCAAAGGAATCACCACCTCTCTCGTCAATGAACTAGTTGGGGTTGTTTCAGACGAAAAATTGCTGGAACTTTTGGCATTGGCAATGTCATCGAACACTGCTGAAACAGTTAAACAAGCCAGAGAACTTATGGACTCGGGGGTTGATCCATTAGTTTTGATGTCCCAACTGGCTAGCCTGATTATGGATATTATTGCTGGAACTTACAACATTATTGTTGCCAAAAAAAATTCCTTATTATTTGGTGGACAAAGCTTAAAGGAAACCGAACTGGAGAGATTAAAGCATGCTTTAAAGCTTCTTTCAGAGGCTGAGAAGCAGCTAAGGGTTTCAAGTGAACGCTCAACATGGTTCACAGCAACTTTGTTACAGCTGGGTTCTGTACCATCTCCAGATCTAACTCAGTCAAGCAGCAGGAGACAGAGTGGAAAGATTACTGAAGGTGATCCATCAAGTTCTTCAAAAGAGGCTACTGTTTACAAACGAAAGCCAGATGCTCAGCATATGCTTCTGGACTCAAGTTCTCCTTCTTCTATGTGCAACGTTGTGAATGGAAATCATAATTTACAGGGGGAGTTATTGTCAAAAATGGACACTGCCAACGATAATTCAAGCCAATTCACGGATGATGGAGACTTGGACACATCACAGAAAGATAGCGTGGTTAGAAATATGATCTTTAGGCGTAAAAGTAAAGAAAAGTTAAGTGACATCTGGGTGCTGTGCATTGAGAAGTGTCACTCAAAGGCTTTGAGACAGCTCCTACTCAGTCATGGGAATCTTTTTTCCATCTCTGAAGCTGAAGGTATTTTGATTGCTTACGTCGCATTTGGGGATGAAGACATCAAATCTAGAGCTGAAAGGTTTTTGAGCAGCATCACAAACGCCATGGAGATGGTTATGAAATGTAATGTAGAGGTTAGAATTATCCTCCTCCCAGAAGGGGATGCTTCTATTAATAGTTTGACCTCAGTTGAGCTAGCAGAACAACTAAAACAACAAGCAGAGACCATTGACAGAGAAAGGAAGTTTGTCAAAGGTACAGCAACAAGTACCTATACTAATCATTCTAGTTTGTTGGATGGAGCGTATAGATCAACCTCCAATTCATCAGAGTCAGTCCCTGAAGGAAATGCTCAAAAAAATGTCATGAGAAAGAAGAGACAGGAAGTTCCAATGCGGAGAATAGAATCTATTATTCGTGAACAAAAATTAGAAACTGCATGGCTGCAAGCCGTCGAAAAAGGAACACCTGGATCATTGAGTCGATCGAAACCTGAGAAGAATCAGGTCCTGCCTCAAGATGGGACGTTTGATGATCAAACGGAAACAAAGAATTCCTCTGGACATTGGAAAGATGAACCAAATCAGGAGCTCAAAATGGATGAAAGAATCCTCCAGAAAGATCAAAATGGTAGAGGGATAGGTCGATATCCAATGTCTCCAAGTCTATTGCATGGTGGCAACCTTGGTGCCAATGCCAATAAAGATTACTTGGAATATGAATCAGGGCCTGCAAATGGAGGCTGTGGTGCATTTTTATGCTGGAATAACCCCAAACCTCAGAGAAGGGGAAAGCCGGTAAGGGGAAATCCTGTTCAGGCACGCAAAGATAGACGATTCTCATTGTTTGGCGAGTGTGGCAAGTCCAAGAAATCAAATCGGAGAAGCAACATCGGAAAAATGACTGGTCGTCAGAACTTATCTCTGTGA 2964 42.24 MEGIPHPIPRTVEEVFCDFKGRRSGLIKALTTDVEKFFQQCDPDVIGILFAEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKHPKEQSATHNNSSKSKSSGKIQSRPSESQSKGVKMSPPPKEDEDSGEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVSGASPLLLKLKNKNRSYSSPKFLRGGKKEDSSYSYSTPQEDLFEVDATNKKGIERIKYLFKEISKAPASAFTRYKVFLIEECHLLPPKTWITFLKFLEEPPHRVVLVFMTTDLDSVPRTIQSRCQKYIFNKIKDGEIIDRLKKICKEESLEIELDALDLIAMNADGSLRDAETMLEQLSLLGKGITTSLVNELVGVVSDEKLLELLALAMSSNTAETVKQARELMDSGVDPLVLMSQLASLIMDIIAGTYNIIVAKKNSLLFGGQSLKETELERLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSVPSPDLTQSSSRRQSGKITEGDPSSSSKEATVYKRKPDAQHMLLDSSSPSSMCNVVNGNHNLQGELLSKMDTANDNSSQFTDDGDLDTSQKDSVVRNMIFRRKSKEKLSDIWVLCIEKCHSKALRQLLLSHGNLFSISEAEGILIAYVAFGDEDIKSRAERFLSSITNAMEMVMKCNVEVRIILLPEGDASINSLTSVELAEQLKQQAETIDRERKFVKGTATSTYTNHSSLLDGAYRSTSNSSESVPEGNAQKNVMRKKRQEVPMRRIESIIREQKLETAWLQAVEKGTPGSLSRSKPEKNQVLPQDGTFDDQTETKNSSGHWKDEPNQELKMDERILQKDQNGRGIGRYPMSPSLLHGGNLGANANKDYLEYESGPANGGCGAFLCWNNPKPQRRGKPVRGNPVQARKDRRFSLFGECGKSKKSNRRSNIGKMTGRQNLSL 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 934886 944839 - Bma006912.1 Bma12g00038 91464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00038 987 MobiDBLite consensus disorder prediction 776 807 - -
Bma12g00038 987 Coils Coil 745 765 - -
Bma12g00038 987 PANTHER PROTEIN STICHEL-LIKE 1 275 909 - -
Bma12g00038 987 Gene3D - 370 431 - -
Bma12g00038 987 Coils Coil 504 531 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 832 873 - -
Bma12g00038 987 Pfam DNA polymerase III subunits gamma and tau domain III 422 483 IPR022754 GO:0003887
Bma12g00038 987 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 275 909 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 192 206 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 965 987 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 839 861 - -
Bma12g00038 987 SUPERFAMILY FYVE/PHD zinc finger 197 238 IPR011011 -
Bma12g00038 987 MobiDBLite consensus disorder prediction 150 206 - -
Bma12g00038 987 Gene3D - 245 368 IPR027417 -
Bma12g00038 987 Pfam DNA polymerase III, delta subunit 285 368 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 938 957 - -
Bma12g00038 987 MobiDBLite consensus disorder prediction 546 572 - -
Bma12g00038 987 SUPERFAMILY post-AAA+ oligomerization domain-like 439 540 IPR008921 GO:0003677|GO:0006260
Bma12g00038 987 MobiDBLite consensus disorder prediction 776 795 - -
Bma12g00038 987 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 244 IPR013083 -
Bma12g00038 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 415 IPR027417 -
Bma12g00038 987 MobiDBLite consensus disorder prediction 546 578 - -
Bma12g00038 987 CDD HLD_clamp_pol_III_gamma_tau 368 431 IPR045085 -
Bma12g00038 987 Pfam Alfin 11 146 IPR021998 GO:0006355|GO:0042393
Bma12g00038 987 SMART PHD_3 207 259 IPR001965 -
Bma12g00038 987 MobiDBLite consensus disorder prediction 151 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00818 Bma-Chr7:26000964 Bma12g00038 Bma-Chr12:934886 5.97E-67 dispersed
Bma08g01024 Bma-Chr8:49360028 Bma12g00038 Bma-Chr12:934886 1.65E-69 dispersed
Bma11g00975 Bma-Chr11:43929644 Bma12g00038 Bma-Chr12:934886 2.90E-66 dispersed
Bma06g00479 Bma-Chr6:22490114 Bma12g00038 Bma-Chr12:934886 1.93E-24 transposed
Bma12g00038 Bma-Chr12:934886 Bma05g00910 Bma-Chr5:47011904 1.89E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58078 PF12165 Alfin 2.50E-64 No_clan Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00038 - - mcha:111008253 894.034