Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00049 ATGGAGGAAAACAATCGCACAACGGATGAACACCTTACAGTCACTAAACCAGATATAGAGCATAATGTGACCAGGATCTTGAAGCTTATTAAGAGTGGAGGCCAAGGGAAGAAAGGGAAAATTCAGAAGGATGCCAAAAAAGAAGCTGAACTCGTTGGGCTCGTCGAGGATTTCTACCAACGGTACCGATCACTTCATTCACTGTGCGATCATCTCAAACGAGATTCAGAAGAAAGAGTCATTCCTGCAAGAACAGAGAGGGAAAAACCTTCCTCGTCTACTCCCAGCTCTGATTCGGAATATTTTTCTTCTGAGGAAGTTAACTCAAACAACAGCATTTTGGATTGCAATGACCAGACGGTGGACAAAAGTTCAAAGCAAGAAGTTGAGACTGGGAATTGTGTGGAGATTAGAGATCTGAAACTGGAGGTTAATTCCTTGCGTGATTTGAGAATTGAATTGGCAAAACAATTGGTAGAACTGAACCAAAAGTTGGAGTCTACGCGCAGAGAAAAAGATGAATTAGATCAGAGAAAGAATCACGAGGTTTCTGAAATTCTGAGACTCGTGGAAGGTTTGAAAGAGGAAGTGGCGGAGAAAACGAAGGAAGCACAGAGAGAACAGGAAGAGAAAGCGGGGTCTCTTGCTCGAATTACGGAATTGGAAATGGAGGTGGAATCCTTACTTGACCAGAAAAATGAATCGGAAGAGAAACTCAACGAGATTAGCAGACTCAAAGAAGAAGAAAAGTTGATGGAAGAACAAAGGAAACAGGAAGAGAAAGAAGGGTTTCTTTCTCGAATCACGGAAATGGAAATGCAGGTGGAATCCTTACTTGAACAGAGAAACAAATCTGAAGAGAAACTCAACGAGATTAACACACTGAAAGGAGAAGAAGAATCTATGGCAGAACAGAGAAAACAGGAAGAGAAAGAAGGGTTTCTCACTCGAATTACGGAATTGGAAATGGAGGTGGAAACCTTACTTGATGAGAGAAATAAATCGGTAGAGAAACTTGACCAGATTAACAGACTCAAGGAAGAAGAAGAATCGATGGCAGAACAGAGAAAACAGAGAGAGAAAGAAGGGTTTCTCGCTCGAATCAAAGAACTGGAAATGCAGGTGGAATCCTTACTTGAACAGAGAAATAAATCGGAAGAGGTAATTGACGAGATTAATCGACTGAAAGAAGAAGAAAAAACGACGGAAGACCAGAGAAAGAAGGACGAGAAAGAGGGATTTCTTGCTCGGATTAGGGAATTGGAAATAGAGGTGGAATCTTTACTTGACCAGAGGAAAAAATCGGAAGAGAAACTCGACGATATTAATCGACGCAAAGAGGAAGAAAATGAGAAATTGCAGAAAAAGAATTCGGAACTGGAGAGACTGTTGACGAACAAAGGAGATGAACTTTCTTTTCTAAAAAAGAGCTATTCGTCTAAGGAAGTTGAAGCGTCAACTCAGATTACTCAACTGGCGAAACATGTTCAAAGTCTGAAAGAAGTGTTGGATTCTTTAGAGGATCGGAAAAGGAAAGAGAAACAAGAATTTTCTCAAAGAATTTGTCAAGCGGAAAACGAGAAAACCAAATTAAACAGCAAGATCTCCGATCAGCAGAAGAAATTGAAAGAACAAGAAGAAATGATAGAGAAATGGAGAAAAGAGAGCAAAGAATCCAAAACCTTAGTTGCAGAGAGGAAGATGGCGGAAATGGCAGAAGAATTTCGCAAAAAAGTGGAAGCCAACATAAGGATTTTATATCAGAGGATTTTGGTAGCAGAACAGCTACAAGCAGAAACCAAAAACAGCTACAGAACAAGAGACATCAGCCATGAACAAGAAATCCAAGCTCTGCTTAAAAAACTCATCCCTGAAATAGGAGAGAAAATGGATCAAACAGCACATAATTTGGAAGAACAAACAGGTAAAATTTTGAACCAAATTTCCAGATCCTCAAACGAGCTTCAAATGGCGAAATGCAGAATTTCAGAGCTAAAGAACGAGTTGAACCGTCTGGGTGCTGTAGTGAACGAAAAAGAAGAGCAAGAATTGCAGCTGAGAGAGAAGGTATGGAAGTTAGAGGCAAACGTGAGCAAAGAGGGAGGAGAGAAGCTGAATTTGATGAACGACATAGCCAAGCAGGAGAGAAAGGTGGGAGAATTGGAGAAGAAAGTGAGAGAGAAGGAAGAAGGAATGATAAGAGTAGCAGAGGAGAAGAGGGAAGCCATCAGACAGCTCTGTATCTTCATCGACTACCATCGCAGCAATTACGATCAGCTCAGGGAAGTGTTTTTGAAAAATAATCTCAAAAAATGA 2316 40.59 MEENNRTTDEHLTVTKPDIEHNVTRILKLIKSGGQGKKGKIQKDAKKEAELVGLVEDFYQRYRSLHSLCDHLKRDSEERVIPARTEREKPSSSTPSSDSEYFSSEEVNSNNSILDCNDQTVDKSSKQEVETGNCVEIRDLKLEVNSLRDLRIELAKQLVELNQKLESTRREKDELDQRKNHEVSEILRLVEGLKEEVAEKTKEAQREQEEKAGSLARITELEMEVESLLDQKNESEEKLNEISRLKEEEKLMEEQRKQEEKEGFLSRITEMEMQVESLLEQRNKSEEKLNEINTLKGEEESMAEQRKQEEKEGFLTRITELEMEVETLLDERNKSVEKLDQINRLKEEEESMAEQRKQREKEGFLARIKELEMQVESLLEQRNKSEEVIDEINRLKEEEKTTEDQRKKDEKEGFLARIRELEIEVESLLDQRKKSEEKLDDINRRKEEENEKLQKKNSELERLLTNKGDELSFLKKSYSSKEVEASTQITQLAKHVQSLKEVLDSLEDRKRKEKQEFSQRICQAENEKTKLNSKISDQQKKLKEQEEMIEKWRKESKESKTLVAERKMAEMAEEFRKKVEANIRILYQRILVAEQLQAETKNSYRTRDISHEQEIQALLKKLIPEIGEKMDQTAHNLEEQTGKILNQISRSSNELQMAKCRISELKNELNRLGAVVNEKEEQELQLREKVWKLEANVSKEGGEKLNLMNDIAKQERKVGELEKKVREKEEGMIRVAEEKREAIRQLCIFIDYHRSNYDQLREVFLKNNLKK 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1056308 1058706 - Bma006921.1 Bma12g00049 91475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00049 771 Coils Coil 704 731 - -
Bma12g00049 771 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 400 769 - -
Bma12g00049 771 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 136 254 - -
Bma12g00049 771 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 337 403 - -
Bma12g00049 771 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 15 120 - -
Bma12g00049 771 Coils Coil 137 262 - -
Bma12g00049 771 PANTHER COP1-INTERACTIVE PROTEIN 1 400 769 - -
Bma12g00049 771 MobiDBLite consensus disorder prediction 87 125 - -
Bma12g00049 771 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 1 76 IPR011684 GO:0003779
Bma12g00049 771 Coils Coil 648 696 - -
Bma12g00049 771 Coils Coil 489 516 - -
Bma12g00049 771 Coils Coil 528 562 - -
Bma12g00049 771 MobiDBLite consensus disorder prediction 79 125 - -
Bma12g00049 771 PANTHER COP1-INTERACTIVE PROTEIN 1 15 120 - -
Bma12g00049 771 PANTHER COP1-INTERACTIVE PROTEIN 1 136 254 - -
Bma12g00049 771 PANTHER COP1-INTERACTIVE PROTEIN 1 337 403 - -
Bma12g00049 771 MobiDBLite consensus disorder prediction 277 311 - -
Bma12g00049 771 MobiDBLite consensus disorder prediction 431 459 - -
Bma12g00049 771 Coils Coil 268 470 - -
Bma12g00049 771 Pfam KIP1-like protein 5 67 IPR011684 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00049 - - - pavi:110760629 371.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00855 Bma12g00049 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00863 Bma-Chr5:46173479 Bma12g00049 Bma-Chr12:1056308 2.32E-38 dispersed
Bma12g00049 Bma-Chr12:1056308 Bma10g01044 Bma-Chr10:28600344 6.33E-06 dispersed
Bma12g00049 Bma-Chr12:1056308 Bma12g00604 Bma-Chr12:27347518 0 wgd
Bma12g00049 Bma-Chr12:1056308 Bma05g00855 Bma-Chr5:46089400 3.13E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g108 . . Bda06g00139 Bda08g00482 . Bpe07g00078 . . . Cmo16g00608 . . . . . Cpe14g00472 . . . . . . . . Cla07g01412 Cam07g1514 Cec07g1610 Cco07g1570 Clacu07g1502 Cmu07g1472 Cre07g1849 . . Cone6ag0838 . . . . Cme07g01580 . . . . . . Bma05g00855 Bma12g00049 . . . . Cma16g00559 . . . . . . . . . . . . . . . . . . . Csa04g00641 Chy07g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001955 2 3 1 4 1 2 2 2 2 2 1 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 5 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00049 Bma_Chr12 FPKM 9.212882 8.812721 19.8659 17.569645 63.157852 64.95575 59.073143 39.936424 39.859318 36.095486