Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma12g00052 | ATGAACGACGCAGATGTATCTAAGCAGATCCAGCAGATGGTGAGGTTTATCCGCCAGGAAGCGGAGGAAAAAGCGAACGAGATCTCTGTTTCTGCCGAAGAAGAATTCAACATCGAGAAGTTGCAGCTGGTTGAGGCAGAAAAGAAGAAGATCAGACAAGAGTACGAGAAAAAGGAGAAGCAAGTCGACGTTCGGAAAAAGATTGAGTATTCCATGCAGCTTAATGCTTCTAGAATTAAAGTTCTCCAAGCCCAAGATGATGTCGTCAACTCCATGAAAGAAGCAGCATCAAAGGAACTTCTAAGCATCTGCCGTGATCAGCATGGATACAAAAATCTCTTGAAAGATCTCATAGTTCAGAGCTTGCTTCGACTGAAAGAGCCAGCTGTATTGCTGCGATGTCGGGAAGATGACCTTCAATTGGTTGAGAATGTGCTACAATCTGCAGCGAAGGAATATGCTCAAAAAGCAAGTGTTCATCCTCCCGAAATTATAGTTGACACTCGTGTTTTTCTACCACCTGCTCCAACCCACTACGATGCTCATGGTCCATATTGCTCTGGAGGTGTGGTGCTGGCATCTCGAGATGGAAAGATTGTTTGTGAGAACACCCTTGACGCAAGGTTGGATGTTGCATTTCGTAAAAAACTTCCAGAGATCCGTAAGAAGCTCTTTGGATAA | 681 | 44.35 | MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVDVRKKIEYSMQLNASRIKVLQAQDDVVNSMKEAASKELLSICRDQHGYKNLLKDLIVQSLLRLKEPAVLLRCREDDLQLVENVLQSAAKEYAQKASVHPPEIIVDTRVFLPPAPTHYDAHGPYCSGGVVLASRDGKIVCENTLDARLDVAFRKKLPEIRKKLFG | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1081180 | 1084007 | + | Bma006923.1 | Bma12g00052 | 91478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma12g00052 | 226 | Gene3D | - | 1 | 62 | - | - | |
| Bma12g00052 | 226 | PANTHER | BNAC03G72900D PROTEIN | 1 | 219 | - | - | |
| Bma12g00052 | 226 | SUPERFAMILY | V-type ATPase subunit E-like | 87 | 226 | - | - | |
| Bma12g00052 | 226 | Coils | Coil | 38 | 61 | - | - | |
| Bma12g00052 | 226 | Hamap | V-type proton ATPase subunit E [atpE]. | 8 | 226 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Bma12g00052 | 226 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 225 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Bma12g00052 | 226 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 219 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Bma12g00052 | 226 | Gene3D | - | 92 | 226 | IPR038495 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma12g00052 | Bma-Chr12:1081180 | Bma12g00600 | Bma-Chr12:27319223 | 1.92E-160 | wgd | |
| Bma12g00052 | Bma-Chr12:1081180 | Bma05g00848 | Bma-Chr5:46031662 | 1.55E-145 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma12g00052 | K02150 | - | nnu:104593422 | 387.497 |