Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00055 ATGGCTGGGAATGCAACAGTCTCTTCAACTCCAATGAAAGCCACCTCCAATGGCTTGTTTCAAGGAGATAATCCTCTTCATTATGCTCTACCTCTCCTCATCTTGCAGATATGCCTTGTGGTTATTCTCACTCGTCTTCTTGCTGCTATTTTCCGTCCATTGAGACAGCCTCGGGTGATTGCTGAGATTGTTGGAGGAATATTACTTGGTCCATCAGCTTTGGGTCGAAACAAGGACTATTTAAACACAATCTTCCCAGCAAAAAGCCTCACGGTCTTGGACACTTTAGCCAATCTAGGCCTCCTCTTCTTCCTCTTCCTCGTAGGCCTAGAGTTAGACCCAAAATCTATCCGCCGAACTGGTAAAAAAGCTTTAAGCATAGCAGCGGCAGGAATTACCCTTCCATTTCTTATGGGAATTGGAACATCTTTTGTGCTCAAAGGAACTATTTCTAAAGGAGTTGATGGACCTCCTTTTCTTGTTTTCATGGGTGTTGCTCTGTCTATCACAGCTTTCCCTGTCTTGGCTCGTATTTTAGCCGAACTCAAGCTTTTAACCACTGATATGGGCCGAATGGCCATGTCTGCAGCAGCAGTAAACGATGTCGCAGCTTGGATTCTCCTCGCTCTCGCCATTGCCCTTTCTGGAACTGGTCGTTCGCCTCTTGTCGCTCTGTATGTTTTCTTATGTGGAAGTGCCTTTGTCGTTTTTTGTATATTCTCTTGTCCCCGCATTTTCAAATGGATGGCTCAGCGATGTCCAGAGGGTGAGCCGGTCAATGAATTATACGTCTGTGCCACTTTAGTCATTGTTTTGGCGGCCAGTTTTATCACAGATATGATCGGAATTCATGCCCTTTTCGGCGCGTTTGTGGTCGGAGTTCTTGTGCCGAAGGAAGGGCCATTTGCAGGGGCTCTAGTGGAAAAAGTTGAGGATCTGGTTTCGGGCTTGTTCCTTCCTTTATACTTTGTTTCAAGTGGTTTGAAGACTAACATAGCTACCATTCAAGGAGCTCAATCATGGGGCCTCCTCGTTTTAGTCATTTTTACAGCTTGCTTTGGGAAAATTGTTGGTACTTTGAGTGCTTGCTTCTTCTGCAAGATGCCTTATGCTGAAGCAGTTGCCCTTGGATTCTTGATGAACACCAAAGGGTTGGTCGAGCTCATCGTCCTCAACATCGGCAAAGACAGAAAGGTACTAAATGATCAAACTTTTGCTATCATGGTTCTAATGGCGATCTTCACGACCTTCATCACCACTCCGATAGTTATGGCGGTTTATAAACCGGCCAAAAGGGCAAGTAAGGCGGATTACAAGATCAGAACAGTCGCCAGAAAAGACCCGAACACTCAGATGAGGATTTTAGCCTGTTTCCACTCCATTAGAAACATACCCACCATGATTAATCTCATTGAAGCTTCTCGAGGAACTGATAAGAGGGAAGGACTCTGCGTATATGCACTGCACATGCTCGAACTCACAGAGAGAACTTCCGCCATTTTAATGGTCCACAAAGCTAGAAAGAATGGATTGCCGTTCTGGAATAAAGGGCTCCGATCAGACTCCGACCAAGTCATCGTTGCTTTCGAAGCTTTCCGGCAGCTCAGCAGAGTCTCAATTCGTCCGATGACGGCGATATCTGCCTTGTCGGACATGCACGATGATATCTGTGGAAGTGCAGAGAGAAAAAGAGCAGCGATCATAATCCTTCCGTATCATAAGCATCAGCGACTCGACGGGACTTTCGAGACTACTTGCCCGGAGTTCCGATTAGTTAACCGGAGAGTTTTGGATCATGCTCCCTGTTCCGTTGGAATACTGATCGATCGGGGGCTCGGAGGAGGCAGTCATGTCTCGGCAAGCAATCTTTCGTCAAGCTTGACTGTTCTCTTCTTCGGCGGCAGAGACGACCGCGAAGCTCTCGCTTATGGATCTAGAATGGCGGAGCATCCCGGAATTACTCTCACTCTCGTTCGCTTCCTTGAAAGCTCCGAAGCCACCCGAGAAATCGCCGGTGTCGAGATCAATCCAAATTCAATCACCCCTTCAACGGATATGGAGGACGACGAAGCAATTAACGAATTGAAGAAAAGGATCAATACCGCCGGAGAAGAGTCGATCAAGTATGTAGACAGAGTGGTGAGAAACGGAACGGAGACCATAGACGCAATCAAGGAGTTCAGTAACTGCAATCTCATTTTAACCGGAAAGAATCCGGAAGGGAGAGTAGTTTCCGCCATTAACGTGAAGATCGAGCACGCTGAGCTCGGCCCAATCGGAAACGTACTGACCACGCCGGAATCCTCAACGTCAGCGTCGGTATTGGTGGTTCAGCAGTACCATGGTCAGAGAGTAATATCAAGCTCCGGTAGAGTTTCAAAGACTGTAGTTTTGCCTGAGGAAGACCCAGAA 2412 47.14 MAGNATVSSTPMKATSNGLFQGDNPLHYALPLLILQICLVVILTRLLAAIFRPLRQPRVIAEIVGGILLGPSALGRNKDYLNTIFPAKSLTVLDTLANLGLLFFLFLVGLELDPKSIRRTGKKALSIAAAGITLPFLMGIGTSFVLKGTISKGVDGPPFLVFMGVALSITAFPVLARILAELKLLTTDMGRMAMSAAAVNDVAAWILLALAIALSGTGRSPLVALYVFLCGSAFVVFCIFSCPRIFKWMAQRCPEGEPVNELYVCATLVIVLAASFITDMIGIHALFGAFVVGVLVPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTNIATIQGAQSWGLLVLVIFTACFGKIVGTLSACFFCKMPYAEAVALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFITTPIVMAVYKPAKRASKADYKIRTVARKDPNTQMRILACFHSIRNIPTMINLIEASRGTDKREGLCVYALHMLELTERTSAILMVHKARKNGLPFWNKGLRSDSDQVIVAFEAFRQLSRVSIRPMTAISALSDMHDDICGSAERKRAAIIILPYHKHQRLDGTFETTCPEFRLVNRRVLDHAPCSVGILIDRGLGGGSHVSASNLSSSLTVLFFGGRDDREALAYGSRMAEHPGITLTLVRFLESSEATREIAGVEINPNSITPSTDMEDDEAINELKKRINTAGEESIKYVDRVVRNGTETIDAIKEFSNCNLILTGKNPEGRVVSAINVKIEHAELGPIGNVLTTPESSTSASVLVVQQYHGQRVISSSGRVSKTVVLPEEDPE 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1109001 1111730 + Bma030489 Bma12g00055 91481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00055 804 PANTHER CATION/H(+) ANTIPORTER 18 7 788 - -
Bma12g00055 804 Gene3D - 32 437 IPR038770 -
Bma12g00055 804 PANTHER CATION/H + ANTIPORTER 7 788 - -
Bma12g00055 804 Gene3D - 479 777 - -
Bma12g00055 804 Pfam Sodium/hydrogen exchanger family 40 422 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00509 Bma-Chr1:4189789 Bma12g00055 Bma-Chr12:1109001 0 dispersed
Bma01g01881 Bma-Chr1:69254349 Bma12g00055 Bma-Chr12:1109001 0 dispersed
Bma04g00738 Bma-Chr4:7730755 Bma12g00055 Bma-Chr12:1109001 0 dispersed
Bma12g00055 Bma-Chr12:1109001 Bma13g00502 Bma-Chr13:9524517 4.11E-152 dispersed
Bma12g00055 Bma-Chr12:1109001 Bma12g00057 Bma-Chr12:1123460 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00055 - - jre:108997299 1149.04