Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00055 ATGGCTGGGAATGCAACAGTCTCTTCAACTCCAATGAAAGCCACCTCCAATGGCTTGTTTCAAGGAGATAATCCTCTTCATTATGCTCTACCTCTCCTCATCTTGCAGATATGCCTTGTGGTTATTCTCACTCGTCTTCTTGCTGCTATTTTCCGTCCATTGAGACAGCCTCGGGTGATTGCTGAGATTGTTGGAGGAATATTACTTGGTCCATCAGCTTTGGGTCGAAACAAGGACTATTTAAACACAATCTTCCCAGCAAAAAGCCTCACGGTCTTGGACACTTTAGCCAATCTAGGCCTCCTCTTCTTCCTCTTCCTCGTAGGCCTAGAGTTAGACCCAAAATCTATCCGCCGAACTGGTAAAAAAGCTTTAAGCATAGCAGCGGCAGGAATTACCCTTCCATTTCTTATGGGAATTGGAACATCTTTTGTGCTCAAAGGAACTATTTCTAAAGGAGTTGATGGACCTCCTTTTCTTGTTTTCATGGGTGTTGCTCTGTCTATCACAGCTTTCCCTGTCTTGGCTCGTATTTTAGCCGAACTCAAGCTTTTAACCACTGATATGGGCCGAATGGCCATGTCTGCAGCAGCAGTAAACGATGTCGCAGCTTGGATTCTCCTCGCTCTCGCCATTGCCCTTTCTGGAACTGGTCGTTCGCCTCTTGTCGCTCTGTATGTTTTCTTATGTGGAAGTGCCTTTGTCGTTTTTTGTATATTCTCTTGTCCCCGCATTTTCAAATGGATGGCTCAGCGATGTCCAGAGGGTGAGCCGGTCAATGAATTATACGTCTGTGCCACTTTAGTCATTGTTTTGGCGGCCAGTTTTATCACAGATATGATCGGAATTCATGCCCTTTTCGGCGCGTTTGTGGTCGGAGTTCTTGTGCCGAAGGAAGGGCCATTTGCAGGGGCTCTAGTGGAAAAAGTTGAGGATCTGGTTTCGGGCTTGTTCCTTCCTTTATACTTTGTTTCAAGTGGTTTGAAGACTAACATAGCTACCATTCAAGGAGCTCAATCATGGGGCCTCCTCGTTTTAGTCATTTTTACAGCTTGCTTTGGGAAAATTGTTGGTACTTTGAGTGCTTGCTTCTTCTGCAAGATGCCTTATGCTGAAGCAGTTGCCCTTGGATTCTTGATGAACACCAAAGGGTTGGTCGAGCTCATCGTCCTCAACATCGGCAAAGACAGAAAGGTACTAAATGATCAAACTTTTGCTATCATGGTTCTAATGGCGATCTTCACGACCTTCATCACCACTCCGATAGTTATGGCGGTTTATAAACCGGCCAAAAGGGCAAGTAAGGCGGATTACAAGATCAGAACAGTCGCCAGAAAAGACCCGAACACTCAGATGAGGATTTTAGCCTGTTTCCACTCCATTAGAAACATACCCACCATGATTAATCTCATTGAAGCTTCTCGAGGAACTGATAAGAGGGAAGGACTCTGCGTATATGCACTGCACATGCTCGAACTCACAGAGAGAACTTCCGCCATTTTAATGGTCCACAAAGCTAGAAAGAATGGATTGCCGTTCTGGAATAAAGGGCTCCGATCAGACTCCGACCAAGTCATCGTTGCTTTCGAAGCTTTCCGGCAGCTCAGCAGAGTCTCAATTCGTCCGATGACGGCGATATCTGCCTTGTCGGACATGCACGATGATATCTGTGGAAGTGCAGAGAGAAAAAGAGCAGCGATCATAATCCTTCCGTATCATAAGCATCAGCGACTCGACGGGACTTTCGAGACTACTTGCCCGGAGTTCCGATTAGTTAACCGGAGAGTTTTGGATCATGCTCCCTGTTCCGTTGGAATACTGATCGATCGGGGGCTCGGAGGAGGCAGTCATGTCTCGGCAAGCAATCTTTCGTCAAGCTTGACTGTTCTCTTCTTCGGCGGCAGAGACGACCGCGAAGCTCTCGCTTATGGATCTAGAATGGCGGAGCATCCCGGAATTACTCTCACTCTCGTTCGCTTCCTTGAAAGCTCCGAAGCCACCCGAGAAATCGCCGGTGTCGAGATCAATCCAAATTCAATCACCCCTTCAACGGATATGGAGGACGACGAAGCAATTAACGAATTGAAGAAAAGGATCAATACCGCCGGAGAAGAGTCGATCAAGTATGTAGACAGAGTGGTGAGAAACGGAACGGAGACCATAGACGCAATCAAGGAGTTCAGTAACTGCAATCTCATTTTAACCGGAAAGAATCCGGAAGGGAGAGTAGTTTCCGCCATTAACGTGAAGATCGAGCACGCTGAGCTCGGCCCAATCGGAAACGTACTGACCACGCCGGAATCCTCAACGTCAGCGTCGGTATTGGTGGTTCAGCAGTACCATGGTCAGAGAGTAATATCAAGCTCCGGTAGAGTTTCAAAGACTGTAGTTTTGCCTGAGGAAGACCCAGAA 2412 47.14 MAGNATVSSTPMKATSNGLFQGDNPLHYALPLLILQICLVVILTRLLAAIFRPLRQPRVIAEIVGGILLGPSALGRNKDYLNTIFPAKSLTVLDTLANLGLLFFLFLVGLELDPKSIRRTGKKALSIAAAGITLPFLMGIGTSFVLKGTISKGVDGPPFLVFMGVALSITAFPVLARILAELKLLTTDMGRMAMSAAAVNDVAAWILLALAIALSGTGRSPLVALYVFLCGSAFVVFCIFSCPRIFKWMAQRCPEGEPVNELYVCATLVIVLAASFITDMIGIHALFGAFVVGVLVPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTNIATIQGAQSWGLLVLVIFTACFGKIVGTLSACFFCKMPYAEAVALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFITTPIVMAVYKPAKRASKADYKIRTVARKDPNTQMRILACFHSIRNIPTMINLIEASRGTDKREGLCVYALHMLELTERTSAILMVHKARKNGLPFWNKGLRSDSDQVIVAFEAFRQLSRVSIRPMTAISALSDMHDDICGSAERKRAAIIILPYHKHQRLDGTFETTCPEFRLVNRRVLDHAPCSVGILIDRGLGGGSHVSASNLSSSLTVLFFGGRDDREALAYGSRMAEHPGITLTLVRFLESSEATREIAGVEINPNSITPSTDMEDDEAINELKKRINTAGEESIKYVDRVVRNGTETIDAIKEFSNCNLILTGKNPEGRVVSAINVKIEHAELGPIGNVLTTPESSTSASVLVVQQYHGQRVISSSGRVSKTVVLPEEDPE 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1109001 1111730 + Bma030489 Bma12g00055 91481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00055 804 PANTHER CATION/H(+) ANTIPORTER 18 7 788 - -
Bma12g00055 804 Gene3D - 32 437 IPR038770 -
Bma12g00055 804 PANTHER CATION/H + ANTIPORTER 7 788 - -
Bma12g00055 804 Gene3D - 479 777 - -
Bma12g00055 804 Pfam Sodium/hydrogen exchanger family 40 422 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00055 - - - jre:108997299 1149.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00509 Bma-Chr1:4189789 Bma12g00055 Bma-Chr12:1109001 0 dispersed
Bma01g01881 Bma-Chr1:69254349 Bma12g00055 Bma-Chr12:1109001 0 dispersed
Bma04g00738 Bma-Chr4:7730755 Bma12g00055 Bma-Chr12:1109001 0 dispersed
Bma12g00055 Bma-Chr12:1109001 Bma13g00502 Bma-Chr13:9524517 4.11E-152 dispersed
Bma12g00055 Bma-Chr12:1109001 Bma12g00057 Bma-Chr12:1123460 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g77 . Blo03g00235 . . . Bpe07g00084 . . . . . . . . . . . . . . . . . . Cla07g00713 Cam07g0769 Cec07g0837 Cco07g0811 Clacu07g0753 Cmu07g0762 Cre07g1116 . . . Cone9ag0826 . . . . . . . . . . . Bma12g00055 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00628 Chy07g01185 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g00509 . 11 822 Antiporter Super Family AT2G13620 69.9 0.0e+00 1124.0
Bma01g01881 . 76 824 Antiporter Super Family AT3G53720 69.7 8.9e-294 1006.1
Bma04g00738 . 84 765 Antiporter Super Family AT3G53720 50.3 6.5e-188 654.4
Bma12g00055 . 80 785 Antiporter Super Family AT3G53720 50.1 4.0e-185 645.2
Bma12g00057 . 1 620 Antiporter Super Family AT3G53720 50.9 2.8e-162 569.3
Bma12g00055 . 1 804 Antiporter Super Family AT5G41610 67.0 1.5e-299 1025.4
Bma04g00738 . 7 765 Antiporter Super Family AT5G41610 64.9 3.1e-281 964.5
Bma12g00057 . 1 616 Antiporter Super Family AT5G41610 66.5 7.3e-230 793.9
Bma01g01881 . 1 801 Antiporter Super Family AT5G41610 52.1 4.3e-214 741.5
Bma12g00055 . 1 801 Antiporter Super Family AT4G23700 66.3 4.1e-297 1017.3
Bma04g00738 . 7 764 Antiporter Super Family AT4G23700 61.7 4.7e-269 924.1
Bma12g00057 . 1 616 Antiporter Super Family AT4G23700 60.4 1.6e-208 723.0
Bma04g00738 . 4 779 Antiporter Super Family AT3G17630 71.7 0.0e+00 1085.1
Bma12g00055 . 11 780 Antiporter Super Family AT3G17630 65.2 1.0e-276 949.5
Bma12g00057 . 1 615 Antiporter Super Family AT3G17630 62.7 4.4e-211 731.5
Bma01g01881 . 8 803 Antiporter Super Family AT3G17630 51.8 1.1e-209 726.9
Bma12g00055 . 12 783 Antiporter Super Family AT1G64170 59.1 4.6e-240 827.8
Bma04g00738 . 6 764 Antiporter Super Family AT1G64170 55.4 6.8e-228 787.3
Bma12g00057 . 1 616 Antiporter Super Family AT1G64170 54.6 9.7e-174 607.4
Bma01g00509 . 11 822 Antiporter Super Family AT2G13620 69.9 0.0e+00 1124.0
Bma12g00055 . 12 783 Antiporter Super Family AT1G64170 59.1 4.6e-240 827.8
Bma04g00738 . 6 764 Antiporter Super Family AT1G64170 55.4 6.8e-228 787.3
Bma12g00057 . 1 616 Antiporter Super Family AT1G64170 54.6 9.7e-174 607.4
Bma12g00055 . 1 801 Antiporter Super Family AT4G23700 66.3 4.1e-297 1017.3
Bma04g00738 . 7 764 Antiporter Super Family AT4G23700 61.7 4.7e-269 924.1
Bma12g00057 . 1 616 Antiporter Super Family AT4G23700 60.4 1.6e-208 723.0
Bma12g00055 . 1 804 Antiporter Super Family AT5G41610 67.0 1.5e-299 1025.4
Bma04g00738 . 7 765 Antiporter Super Family AT5G41610 64.9 3.1e-281 964.5
Bma12g00057 . 1 616 Antiporter Super Family AT5G41610 66.5 7.3e-230 793.9
Bma01g01881 . 1 801 Antiporter Super Family AT5G41610 52.1 4.3e-214 741.5
Bma04g00738 . 4 779 Antiporter Super Family AT3G17630 71.7 0.0e+00 1085.1
Bma12g00055 . 11 780 Antiporter Super Family AT3G17630 65.2 1.0e-276 949.5
Bma12g00057 . 1 615 Antiporter Super Family AT3G17630 62.7 4.4e-211 731.5
Bma01g01881 . 8 803 Antiporter Super Family AT3G17630 51.8 1.1e-209 726.9
Bma01g01881 . 76 824 Antiporter Super Family AT3G53720 69.7 8.9e-294 1006.1
Bma04g00738 . 84 765 Antiporter Super Family AT3G53720 50.3 6.5e-188 654.4
Bma12g00055 . 80 785 Antiporter Super Family AT3G53720 50.1 4.0e-185 645.2
Bma12g00057 . 1 620 Antiporter Super Family AT3G53720 50.9 2.8e-162 569.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00055 Bma_Chr12 FPKM 9.853778 7.139534 10.082565 14.20509 11.390334 7.466026 12.138597 7.485079 6.661359 11.674439