Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00058 GAGAAACCTAGCTCATCAATGGCGGCCAAAACTCCCATTATTTTTCTCTTCTTTTTTCTCGCTCTTTCTTCTTCTTCTTTAGCCAACCCAGCCATGAAGAAACAGTACAAACCCTGCAAAAACTTAGTCTTATACTTTCACGACATTATTTACAACGGAAAAAACGCAGCAAACGCCACTTCCGCCATTGTTGCTGGTCCTGAAGGTTCGAACTTAACCATTTTAGCCGATAAGTTTCACTTCGGAAACATAGCTGTTTTCGACGACCCTATCACTCTAGATAACAACCTCCGGTCGAAGCCAGTCGGAAGAGCTCAGGGAATGTACATTTACGATACGAAGAACACCTACACAGCTTGGCTAGGATTCTCGTTTTCTCTGAATTATTCCGGCTATAAGGGCACCATAAACTTCGCCGGAGCCGATCCAATCATGGTGAAGACGAGAGACATATCAATTATAGGCGGCACCGGCGACTTTTTCATGCACCGGGGAGTGGCGACGATTATGACTGATGCGTTTGAAGGGGAAGTCTATTTTAGGCTTCGCGTGGACATCAAGTTTTACGAGTGTTGGTGA 579 45.08 EKPSSSMAAKTPIIFLFFFLALSSSSLANPAMKKQYKPCKNLVLYFHDIIYNGKNAANATSAIVAGPEGSNLTILADKFHFGNIAVFDDPITLDNNLRSKPVGRAQGMYIYDTKNTYTAWLGFSFSLNYSGYKGTINFAGADPIMVKTRDISIIGGTGDFFMHRGVATIMTDAFEGEVYFRLRVDIKFYECW 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1129864 1130442 + Bma006928.1 Bma12g00058 91484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00058 192 Pfam Dirigent-like protein 39 184 IPR004265 -
Bma12g00058 192 Gene3D - 28 187 IPR044859 -
Bma12g00058 192 PANTHER DIRIGENT PROTEIN 12 192 - -
Bma12g00058 192 PANTHER DIRIGENT PROTEIN 12 192 IPR004265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00058 - - - csv:105435185 305.449
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma12g00058 Bma14g00622 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00646 Bma-Chr2:17163465 Bma12g00058 Bma-Chr12:1129864 6.42E-94 dispersed
Bma10g00159 Bma-Chr10:1390724 Bma12g00058 Bma-Chr12:1129864 1.54E-11 dispersed
Bma10g00161 Bma-Chr10:1398838 Bma12g00058 Bma-Chr12:1129864 6.61E-12 dispersed
Bma12g00058 Bma-Chr12:1129864 Bma14g00485 Bma-Chr14:5478491 4.39E-11 dispersed
Bma12g00058 Bma-Chr12:1129864 Bma14g00622 Bma-Chr14:6719072 4.71E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g71 . Blo03g00233 Bda06g00130 . Bpe05g00670 Bpe07g00085 . Bma14g00622 . Cmo16g00622 . . . . . Cpe14g00484 . . . . . . . . Cla07g00729 Cam07g0783 Cec07g0848 Cco07g0819 Clacu07g0766 Cmu07g0773 Cre07g1125 . Cone12ag0269 . Cone9ag0824 . . . Cme07g01600 . . Bda07g00469 . . Bpe11g00646 . Bma12g00058 . . . . Cma16g00570 . . . . . . . . . . . . . . . . . . . Csa04g00624 Chy07g01190 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001461 2 2 1 3 3 3 3 3 3 2 3 3 2 1 2 1 3 3 3 3 3 3 3 2 2 3 3 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00058 Bma_Chr12 FPKM 13.035013 12.97229 12.88087 13.632948 9.826033 10.268607 8.976914 22.776421 22.942131 19.447725