Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00060 ATGGCGGAGCATGACGAGTCGAAGGCTGATTCTTTGTTGGAGAAGATAACTGAGAAGATTCACGGCCACGATTCGTCTTCTTCGTCGGAGTCGGAGGACGAGAAGGGTGGCGATTCTCATTCTCTCAAATCCAACGTTTACAGGCTGTTTGGAAGGGAAAAGCCTGTCCACAAGGTTCTTGGTGGTGGAAAATCTGCTGATGTTTTCCTTTGGAGAGACAAAAAGACATCAGGGGGAGTGCTAGGTGGTGCAACAGCTATTTGGGTTCTTTTTGAACTGATCGAGTACCACTTACTTACTCTTGTTTGCCACATATTAATTCTTGGCCTTGGATTGGTGTTCTTGTGGTCAAATGTTTCCGTCTTCATTAACAAGTCGCCCCCTCAAATTCCAAAACTCAACATTCCAGAGGATCCAGTTCGGCAGATAGTCTCTGATCTTCGAATTGAGATAAACCAAGTTCTCTCTATTTTGCGGGACATTGCATCAGGAAGGGATTTAAAGAAATTTTTATCTGTGATTGCTGGCTTATGGGTGTTGTCCATCGTGGGGAACTGTTGCAACTTCATAACTTTGTTCTACATAGCATTTGTTTTCCTCCACACTGCCCCTGTGTTCTATGAGAAGTACGAGGATCAGGTTGACTCGTATGCTGAGAAAGCAATGGCAGAGATCAAAAAGCAGTACGTAGTCTTTGACGCCAAGGTTCTAAGTAAGATTCCAAAGGGACCATTGAAGGATAAAAAGTTAGCCTAG 756 44.05 MAEHDESKADSLLEKITEKIHGHDSSSSSESEDEKGGDSHSLKSNVYRLFGREKPVHKVLGGGKSADVFLWRDKKTSGGVLGGATAIWVLFELIEYHLLTLVCHILILGLGLVFLWSNVSVFINKSPPQIPKLNIPEDPVRQIVSDLRIEINQVLSILRDIASGRDLKKFLSVIAGLWVLSIVGNCCNFITLFYIAFVFLHTAPVFYEKYEDQVDSYAEKAMAEIKKQYVVFDAKVLSKIPKGPLKDKKLA 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1167462 1170041 - Bma006931.1 Bma12g00060 91486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00060 251 PANTHER RETICULON-LIKE PROTEIN 1 250 - -
Bma12g00060 251 MobiDBLite consensus disorder prediction 19 40 - -
Bma12g00060 251 Pfam Reticulon 66 221 IPR003388 -
Bma12g00060 251 ProSiteProfiles Reticulon domain profile. 65 251 IPR003388 -
Bma12g00060 251 PANTHER RETICULON 1 250 IPR045064 GO:0009617
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00060 - - - pop:7472736 378.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00527 Bma-Chr5:26595135 Bma12g00060 Bma-Chr12:1167462 1.80E-18 dispersed
Bma06g01179 Bma-Chr6:48882840 Bma12g00060 Bma-Chr12:1167462 7.74E-90 dispersed
Bma07g01070 Bma-Chr7:43186670 Bma12g00060 Bma-Chr12:1167462 4.58E-69 dispersed
Bma08g00164 Bma-Chr8:2036054 Bma12g00060 Bma-Chr12:1167462 5.70E-59 dispersed
Bma08g01059 Bma-Chr8:49676981 Bma12g00060 Bma-Chr12:1167462 1.02E-35 dispersed
Bma10g00691 Bma-Chr10:10456922 Bma12g00060 Bma-Chr12:1167462 5.30E-07 dispersed
Bma12g00060 Bma-Chr12:1167462 Bma15g00874 Bma-Chr15:26109404 9.68E-25 dispersed
Bma12g00060 Bma-Chr12:1167462 Bma02g01069 Bma-Chr2:52414404 1.28E-118 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g61 Blo02g01126 . Bda06g00125 Bda08g00499 Bpe05g00665 Bpe07g00090 . . Cmo06g01077 . Cma02g01416 Cma15g01257 Car02g01186 Car15g01134 . . Cpe05g00366 . . . . . . . . . . . . . . Cone8ag0269 Cone12ag0275 Cone6ag0819 Cone9ag0818 . Csa05g00229 Chy09g01271 . . . . . . . . Bma12g00060 . Cmo02g01447 Cmo15g01325 . . Car06g00886 . . Cpe13g00128 Bhi12g00174 . . Lac11g2034 Hepe06g1503 . Lcy12g1596 Cla01g00212 Cam01g0217 Cec01g0211 Cco01g0215 Clacu01g0212 Cmu01g0206 Cre09g2301 Lsi09g00200 . . Cme09g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000326 4 3 4 3 4 4 7 4 4 5 4 4 7 3 4 7 4 9 7 4 4 4 4 4 4 4 4 6 4 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00060 Bma_Chr12 FPKM 31.777006 32.532948 18.094669 18.286215 58.038223 52.872765 56.619728 34.057735 36.448029 34.808323