Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00064 ATGGAGGGGAAGGAAGAGGATGTTAAGCTCGGAGCGAACAAGTTTTCCGAGAGGCAACCGATTGGTACGTCTGCTCAGACAGACAAGGACTACAAGGAACCACCGCCGGCGCCGTTGTTTGAGCCAGGAGAGCTTACCTCGTGGTCGTTTTACAGAGCCGGAATTGCAGAGTTCATTGCAACTTTCTTGTTCCTTTACATCTCAGTGTTGACTGTCATGGGTGTTGTCAAAGCTCCTAATAAATGTGCGTCTGTGGGTATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCCCTTGTCTACTGCACTGCTGGTATTTCCGGAGGACACATCAACCCGGCTGTGACCTTCGGTCTCTTTCTAGCCAGAAAGCTCTCACTCACTAGAGCCATCTTCTACATAGTAATGCAATGCCTGGGAGCCATTTTTGGAGCTGGTGTGGTGAAAGGATTTGAAGGCGCAACGACGTACGAACAGAAACTGGGTGGCGCTAACATCGTCAACCCTGGCTACACCAAAGGAGATGGTCTCGGAGCTGAAATCGTCGGCACTTTTGTGCTCGTCTACACCGTCTTCTCCGCCACTGATGCTAAGAGAAACGCCAGAGACTCCCACGTTCCGATTTTGGCGCCACTTCCGATTGGATTTGCGGTGTTTTTGGTTCATTTAGCGACGATTCCGATCACCGGAACTGGTATCAACCCAGCAAGGAGTCTTGGAGCGGCAATCATCTACAACAGACAGCATGCATGGGACGATCAATGGATCTTCTGGGTTGGACCCTTCATCGGAGCTGCTCTTGCTGCCTTGTACCATGTCATTGTGATCAGAGCCATTCCTTTCAAGACCAAAGCTTGCGCTTAA 870 50.46 MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEPPPAPLFEPGELTSWSFYRAGIAEFIATFLFLYISVLTVMGVVKAPNKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAIFGAGVVKGFEGATTYEQKLGGANIVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDQWIFWVGPFIGAALAALYHVIVIRAIPFKTKACA 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1219290 1220615 - Bma006935.1 Bma12g00064 91490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00064 289 MobiDBLite consensus disorder prediction 1 35 - -
Bma12g00064 289 PANTHER AQUAPORIN PIP1-3 1 286 - -
Bma12g00064 289 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma12g00064 289 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma12g00064 289 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma12g00064 289 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma12g00064 289 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma12g00064 289 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma12g00064 289 TIGRFAM MIP: MIP family channel proteins 56 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma12g00064 289 Gene3D Glycerol uptake facilitator protein. 37 287 IPR023271 -
Bma12g00064 289 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Bma12g00064 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Bma12g00064 289 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Bma12g00064 289 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma12g00064 289 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00835 Bma12g00064 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00261 Bma-Chr3:1993417 Bma12g00064 Bma-Chr12:1219290 1.44E-175 dispersed
Bma07g00147 Bma-Chr7:2120793 Bma12g00064 Bma-Chr12:1219290 1.65E-122 dispersed
Bma08g01152 Bma-Chr8:50551770 Bma12g00064 Bma-Chr12:1219290 1.24E-127 dispersed
Bma12g00064 Bma-Chr12:1219290 Bma08g00749 Bma-Chr8:43945857 7.55E-64 dispersed
Bma12g01165 Bma-Chr12:44195489 Bma12g00064 Bma-Chr12:1219290 4.41E-27 dispersed
Bma06g00489 Bma-Chr6:22956743 Bma12g00064 Bma-Chr12:1219290 2.97E-42 transposed
Bma12g00064 Bma-Chr12:1219290 Bma05g00835 Bma-Chr5:45726737 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00064 K09872 - dcr:108208983 537.339