Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00068 ATGGAAAATTCCCAATTTCTTCAAAAAGATTCAACACAAAAACATACTACTGGTTGCATTTTCCTTGACAGAAAAGAGTCCGAGAATATGATGCACATCCGGGAATCCCCCAAAACATCAAGATTTGTGGTTTGGAATAGTGAAGGTTATGCAATTGTATATATGATATCATATTTGAATGACATATTTATGTGCCAACCTCTTTGTGAGATTCCCGCCTTACCTTGTTCCTCAAATTTGAGATCATCAAAATTTTTTGTTCAATCGAGCCATTGTCTACTATGCATCGAATCACTTTGCTATTGTGTGGAAGAAACTAAACACTGGACTCCCAACATAACGATTTATGAAAAGTGTGAGGACAATGGGAAGTTTTTTCAGCAATGCAATATGCTTTGTAAAGGAAAGTATATGGTTGACTGGATCCCATTTTCCTCTTCCCTCCATCAAATTGAGGACCAATCTGGTAGGAAAGTCGAGTTAAGTTCTGATAGATTGGCCGTTCAAAGTTCTGAAGTTGAAATAACGATGTGCATGAATGATGAAAATCATGCTTTTGTCAGTAAGGGTAAAGTAGTGACTTCTTCTATGGTTATCTCTGGCAGTTTCTGCATTCCGTATGCTATTGTTTATGGCTTCTCTAGTGGGGCAATAGAGGTTGTTAGCTTTGATTCATTTCGGGATAGCTTTGATTCATTTCCGGCAACATCTCCTCATTGTGGAAGTTCTTATGGTGAAGTGTGTTCTAATATGCCCAAAGTCAAATTTTTAGGTCACACAGGAGCTGTACTGTGTTTGGCAACTCATCAGATGATGGGCATTGCTAAAGGATGGAATTTCAAACGTGTTTTGTTGTCTGGAAGCATGGATTGCACAGTTCGTGTGTGGGATCTTGACTCTGGAAATATTATCACTATCATGCACCAACATGTTGCTCCCGTGAGACAGATAATTCTTTCCCCTAAAGAAACCAACCGCCCATGGATTGATTGTTTTCTTTCTGTTGGAGAGGATTCATGCATCGCTCTTACTTCTTTGGAGACCTTAAGAGTGGAGAGAATGTTTCCTGGCCATGCCAGTTATCCTACAAAAGTTGTGTGGGATGGTATTAGAGGTTATGTTGCATGCCTATGCAAAGACCATTCTGGAACAGCTGATGCAGTAGATGTTCTATACATTTGGGACATTAAAACAGGTTCTCGTGAGCGGATTCTTCATGGGAGTGCTTCTCATGCAATGTTTGACCATTTTTGTAGAAGCATCAGTCAACATTCTCTGTCTGATACTGCTTTGAGTGGAGATACCTCAGCTTCTTCATTGCTGCTTACGATAATTGAAGAAGAAAGTCTTTTTCAATCTGCTGCAGTTAATTTGAGTAAATCAGTTACTTCAGCAAATATGGTTACAAGTTTGACAAAAACGAAAGAAACTATCCCTTTTCAGTCACATCTCGGTAAAGGAATGTCTGTGAAATCATTGCCTGCCACTTCATCTATTTCTCAAAGCATTAAACATTCAATCAGATGCTCTTCTCCATTCCCTGGACTGACTTATGTAACTTTTGATCTTGCATCATTAATGTGTTATAAAATATCTGACTCCATAGAAAATGACAGCAATTACGAAGAAACACACAATATAAAGGAGCAGAAAACTGATACATCAAGTTTCAGTCCCACTAAGTTTGATGATGGATCTATTATGCCGGGGACCTTGATTGATTCTGTTGAGAGAGGGACTAAATCACTCGAAGAGTGCTTGGTTCGGTTTAGTCTATCCTTTTTACACTTGTGGAATGTAGACAGAGATCTTGACAATTTGCTGATTACAGACATGAAGTTAAAGAGACCAAATAATTTTATTGTCTCTTCCGGATTGCAGGGGGACAGAGGTTCTTTAACGGTGTCTTTTCCTGGTATGAGTTCTATTCTTGAGCTTTGGAAATCATCATCTGAATTTTGTGCCATGAGATCGCTCACAATGGTGTCCCTTGCTCAACGCATGATTACCTTATCCCACTCGGGTTCTGCTGCGAGCAGGGCTTTAGCTGCGTTCTACAGTAGAACGTTTGCCGAAAAAGTCCCAGATATGAAGCCACCTTTACTTCAGCTTTTGGTGAGTTTTTGGCAAGATAAAAGTGAACATGTTCGTATGGCTGCACGTTCTCTATTTCATTGTGCTGCTTCACGCTCAATTCCTCTTCCGCTGTGTGGTCAAAGATCCACTGAGCAAGGAAATACGAGGATCTCAGCTGGAGCCAGTCAAAATGAAACTGAACCTTCTGAAGAGAATCTACATCAATCGGCAACAGGACTTTCTCAAGCAGAAGATTCTAATATAAGGACTTGGCTAGAATCATTTGAACTGCAAGATTGGATTTCTTGTGTTGGAGGAACAAGTCAAGACGCAATGACGTCTCATATCATTGTTGCTGCAGCATTGGCTATTTGGTATCCAAGTCTTGTAAAGCCCCGTCTTTCAATGCTGGTTATTCATCCATTAGTGAAGTTGGTAATGGCCATGAATGAGAAATACAGTTCTACTGCAGCAGAACTCATTGCAGAAGGTATGGAGAGCACGTGGAAAGTATGTCTTGGGTCTGAAATTCATCGATTCATTGAGGATATATTCTTCCAGATAGAGTGTGTCAGTGCTCCATTGGTCAATCTGCGTGCACGAAATGAGGCTGCTTCAACTGCTATTCGTGAAACTTTAGTTGAAATTCTTCTTCCAAGTTTAGCTATGGCTGATATACATGGTTTTCTAACGGTCATAGAGAGCCAAATCTGGTCTACATCATCAGATTCATCCGTTCACCTTGTGTCGTTGATGACTCTGGTCAGAGTTGTGCGTGGATGTCCAAGAAACTTGGCACAATACCTCGATAAGCTTGTTAATTTCATTTTACATACCATGGACCCTAGCAACACTGTCATGCGCAAAACATGCTTTCAGAGTTCAATGACTGTTTTAAAGGAAGTTGTACATGTCTTTCCTATGGTAGCCTTGAATGATTCATGGACGAGATTAGCTGTTGGGGATGTAATTGGAGAGATTGACAATGCAAGCATTTCAGTATATGACGTTCAAAGTGTTACAAAGATTAAGGTTTTGGATGCAAGTGGACCACCTGGACTTCCAAGTTTGCTTGCATCGGAGTCAAAGACTATGGTAACTTCTGCAATTTCTGCCTTGAGCTTTTCTCCAGATGGAGAGGGGTTGGTTGCCTTTTCTGAACATGGGTTAATGATACGATGGTGGTCATTAGGATTTGTTTGGTGGGAGAAACTGAGCAGGAACTTTGTTCCTGTTCAATGCACCAAACTTATCTTTGTTCCACCATGGGAAGGATTCTCACCGAACTCTTCAAGGTCAAGCATAATGGAAAGCATAATGGGACCTGATAAACGTTCAAATGTTAAGGACAATGGAAAGGGTTTAAATCATGTGGATAAATTGTCGCTATTGATTCACAATCTTGATCTCTCTTATAGACTGGAGTGGGTTGCTGATCGAAAAGTAACTTTGAAGAGGCTTGGTCGCGAACTTGGGACTTTTCAGTTCTAG 3567 40.37 MENSQFLQKDSTQKHTTGCIFLDRKESENMMHIRESPKTSRFVVWNSEGYAIVYMISYLNDIFMCQPLCEIPALPCSSNLRSSKFFVQSSHCLLCIESLCYCVEETKHWTPNITIYEKCEDNGKFFQQCNMLCKGKYMVDWIPFSSSLHQIEDQSGRKVELSSDRLAVQSSEVEITMCMNDENHAFVSKGKVVTSSMVISGSFCIPYAIVYGFSSGAIEVVSFDSFRDSFDSFPATSPHCGSSYGEVCSNMPKVKFLGHTGAVLCLATHQMMGIAKGWNFKRVLLSGSMDCTVRVWDLDSGNIITIMHQHVAPVRQIILSPKETNRPWIDCFLSVGEDSCIALTSLETLRVERMFPGHASYPTKVVWDGIRGYVACLCKDHSGTADAVDVLYIWDIKTGSRERILHGSASHAMFDHFCRSISQHSLSDTALSGDTSASSLLLTIIEEESLFQSAAVNLSKSVTSANMVTSLTKTKETIPFQSHLGKGMSVKSLPATSSISQSIKHSIRCSSPFPGLTYVTFDLASLMCYKISDSIENDSNYEETHNIKEQKTDTSSFSPTKFDDGSIMPGTLIDSVERGTKSLEECLVRFSLSFLHLWNVDRDLDNLLITDMKLKRPNNFIVSSGLQGDRGSLTVSFPGMSSILELWKSSSEFCAMRSLTMVSLAQRMITLSHSGSAASRALAAFYSRTFAEKVPDMKPPLLQLLVSFWQDKSEHVRMAARSLFHCAASRSIPLPLCGQRSTEQGNTRISAGASQNETEPSEENLHQSATGLSQAEDSNIRTWLESFELQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPRLSMLVIHPLVKLVMAMNEKYSSTAAELIAEGMESTWKVCLGSEIHRFIEDIFFQIECVSAPLVNLRARNEAASTAIRETLVEILLPSLAMADIHGFLTVIESQIWSTSSDSSVHLVSLMTLVRVVRGCPRNLAQYLDKLVNFILHTMDPSNTVMRKTCFQSSMTVLKEVVHVFPMVALNDSWTRLAVGDVIGEIDNASISVYDVQSVTKIKVLDASGPPGLPSLLASESKTMVTSAISALSFSPDGEGLVAFSEHGLMIRWWSLGFVWWEKLSRNFVPVQCTKLIFVPPWEGFSPNSSRSSIMESIMGPDKRSNVKDNGKGLNHVDKLSLLIHNLDLSYRLEWVADRKVTLKRLGRELGTFQF 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1243747 1249958 + Bma006939.2 Bma12g00068 91494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00068 1188 MobiDBLite consensus disorder prediction 737 771 - -
Bma12g00068 1188 ProSitePatterns Trp-Asp (WD) repeats signature. 284 298 IPR019775 -
Bma12g00068 1188 SUPERFAMILY WD40 repeat-like 926 1089 IPR036322 GO:0005515
Bma12g00068 1188 Gene3D - 241 507 IPR015943 GO:0005515
Bma12g00068 1188 SMART WD40_4 1050 1088 IPR001680 GO:0005515
Bma12g00068 1188 SMART WD40_4 249 297 IPR001680 GO:0005515
Bma12g00068 1188 SMART WD40_4 348 395 IPR001680 GO:0005515
Bma12g00068 1188 SMART WD40_4 300 345 IPR001680 GO:0005515
Bma12g00068 1188 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 306 IPR001680 GO:0005515
Bma12g00068 1188 SUPERFAMILY WD40 repeat-like 258 436 IPR036322 GO:0005515
Bma12g00068 1188 PANTHER RABCONNECTIN-3B, ISOFORM A 9 1187 - -
Bma12g00068 1188 SUPERFAMILY ARM repeat 677 987 IPR016024 -
Bma12g00068 1188 PANTHER RABCONNECTIN-3B, ISOFORM A 9 1187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00068 K24738 WDR7; rabconnectin-3b - qsu:112022753 1442.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g47 . Blo03g00223 Bda06g00120 . . Bpe07g00097 . . . . . . . . . . . . . . . . . . Cla07g00745 Cam07g0798 Cec07g0863 Cco07g0835 Clacu07g0778 Cmu07g0786 Cre07g1139 . . Cone6ag0814 Cone9ag0813 . . . Cme07g01612 . . . . . . . Bma12g00068 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00613 Chy07g01198 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007130 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00068 Bma_Chr12 FPKM 9.494118 15.581985 9.013721 14.002993 14.126025 13.396737 12.076035 8.417248 8.692517 9.323984