Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00069 TTGTCGAAGATGGCTACAGGAAATGGCCATGGTGAAGATTCTCCTTATTTCGATGGCTGGAAGGCGTACGATAGCGACCCTTTTCATCTTAAACTGAATCGTCGTGGAGTTATCCAGATGGGTCTCGCAGAAAATCTGCTATCAGTGGATTTGGTCCAAGAGTGGGTCTTGAATAACCCACAAGCCTCCATTTGCAGTGCAGAAGGAGTGAATAAGTTCAGCGAGAAGGCTATTTTCCAGGATTACCATGGCTTGCCAGAGTTCAGAAACGCTGTGGCTAAATTCATGGGGAGGACGAGGGGGGATAGGGTGAGCTATGATCCTGATCGGATTGTGATGAGCGGAGGGGCGACCGGAGCTCATGAAATGCTGGCTTTCTGTCTGGCCAATCCCGGGGAAGCTTTTCTTGTTCCTACACCTTATTATCCTGGATTCGATCGAGATTTAGGATGGAGAACAGGAGTAAAACTTCTTCCGGTCGTCTGCGAAAGCTCGAACAACTTCAAAATAACAACAAAATCTCTCGAAACAGCCTTGGAAAAAGCTCAAGAATCCAACGTCAAAATCAAAGGCTTGCTCATAAACAACCCCTCAAATCCACTCGGTACGGTTTTAGACTCAGAAACCCTCAAAAACCTTGTCACCTTCGTCAACCAAAACAACATCCACCTAATCTGCGATGAAATCTACGCAGCCACTGTCTATTCCCGACCCAACTTCATCAGCATCTCAGAACTAATTGAAGGAGATCCCCAGTGCAACAGAAATCTCATTCACGTAGTTTACAGTCTCTCAAAAGACATGGGATTTCCAGGCTTTAGAGTTGGAATCGTGTATTCTTACAACGACCAAGTCGTTCAGATTGCCAGAAAGATGTCCAGTTTCGGCCTCGTTTCAACCCAAACCCAACACTTGATAGCCGGAATGCTGTCGGACGACGAGTTCATCGACTCCTTTATCAGAGAAAGCGGCCGGAGATTAGGAGCCAGACAGAAAGTGTTCACCAAAGGGCTAGCCCAGGTGGGAATAGAGTGTTTGAAGAGCAACGCCGGGCTATTTCTATGGATGGATTTACGTCATCTCTTGAAAGAGAAGACGTTCGAAGCAGAAATGGTGCTGTGGAGACTGATAATCAACGAGGTAAAGCTGAACGTTTCACCTGGTTCTTCGTTCCACTGCTCCGAGCCAGGCTGGTTCAGGATTTGCTTTGCGAACATGGAAGAAGAAACCATGGGCGAAGCTTTGAGGAGAATAAGAATGTTTGTTGTCCAAAACAAGGAGGTGAAAACGAAGAAGAGAAAGCATTTTTGGTGGGAGAGTAATCTGGATCCGCTTCTGCTTTCTCCCAGAAGATTGGACGACGTACTCATGTCGCCTCATTCGCCTCTTCCTCCCTCGCCACTCGTTCGAGCCGCCACA 1419 47.22 LSKMATGNGHGEDSPYFDGWKAYDSDPFHLKLNRRGVIQMGLAENLLSVDLVQEWVLNNPQASICSAEGVNKFSEKAIFQDYHGLPEFRNAVAKFMGRTRGDRVSYDPDRIVMSGGATGAHEMLAFCLANPGEAFLVPTPYYPGFDRDLGWRTGVKLLPVVCESSNNFKITTKSLETALEKAQESNVKIKGLLINNPSNPLGTVLDSETLKNLVTFVNQNNIHLICDEIYAATVYSRPNFISISELIEGDPQCNRNLIHVVYSLSKDMGFPGFRVGIVYSYNDQVVQIARKMSSFGLVSTQTQHLIAGMLSDDEFIDSFIRESGRRLGARQKVFTKGLAQVGIECLKSNAGLFLWMDLRHLLKEKTFEAEMVLWRLIINEVKLNVSPGSSFHCSEPGWFRICFANMEEETMGEALRRIRMFVVQNKEVKTKKRKHFWWESNLDPLLLSPRRLDDVLMSPHSPLPPSPLVRAAT 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1254281 1256055 + Bma030490 Bma12g00069 91495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00069 473 Gene3D - 60 312 IPR015421 GO:0003824
Bma12g00069 473 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 40 66 - -
Bma12g00069 473 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 110 130 - -
Bma12g00069 473 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 222 245 - -
Bma12g00069 473 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 73 89 - -
Bma12g00069 473 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 257 281 - -
Bma12g00069 473 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 289 312 - -
Bma12g00069 473 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 186 210 - -
Bma12g00069 473 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 132 153 - -
Bma12g00069 473 SUPERFAMILY PLP-dependent transferases 10 421 IPR015424 -
Bma12g00069 473 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 1 433 - -
Bma12g00069 473 Pfam Aminotransferase class I and II 38 418 IPR004839 GO:0009058|GO:0030170
Bma12g00069 473 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 433 - -
Bma12g00069 473 CDD AAT_like 79 419 - -
Bma12g00069 473 Gene3D Aspartate Aminotransferase, domain 1 26 417 IPR015422 GO:0003824
Bma12g00069 473 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 263 276 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00069 K20772 ACS1_2_6; 1-aminocyclopropane-1-carboxylate synthase 1/2/6 [EC:4.4.1.14] - jre:108983882 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00893 Bma-Chr4:11845873 Bma12g00069 Bma-Chr12:1254281 0 dispersed
Bma12g00069 Bma-Chr12:1254281 Bma15g01100 Bma-Chr15:43815474 1.16E-173 dispersed
Bma13g01194 Bma-Chr13:45207112 Bma12g00069 Bma-Chr12:1254281 3.94E-21 dispersed
Bma15g00214 Bma-Chr15:2125877 Bma12g00069 Bma-Chr12:1254281 4.18E-23 dispersed
Bma12g00069 Bma-Chr12:1254281 Bma03g01167 Bma-Chr3:16572475 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00069 Bma_Chr12 FPKM 4.977982 6.845594 10.79831 11.086043 6.31322 2.76602 7.664613 5.928086 4.154294 7.026816