Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00072 ATGGAAGGTTTGAGAGAAGCGTTTACTGAATCTGAATCATTAACCTCGAGAATCGGTTGGCCTCTTCTGCATAAATATTCTTCTACTGTTTTCACTCGTTCATGTCTGAACCGCCCTTTAGCCATCCTTTTATCTCTCTCTAGTTTCTCTCCGCTGCTCTCACCAAACCCATCAACGAAAATGTCTTCCCCCAGCAAACGGCGAGAAATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTCGAGATGATGAACGATAGCATGCAAGAGTTCTATGTGGGTTTCCATGGACCTAAAGAGAGCCCATATCAAGGAGGTGTGTGGAGGATAAGAGTTGAGTTGCCTGATGCTTATCCTTATAAATCACCATCTATTGGCTTTGTCAACAAAATTTATCATCCAAATGTTGATGAGATGTCTGGCTCTGTTTGTTTAGATGTTATCAACCAAACTTGGAGCCCCATGTTCGACCTTGTAAATGTTTTTGAAGTGTTTCTTCCCCAACTTCTATTGTATCCCAACCCATCAGACCCGTTGAATGGAGAAGCTGCCGCTCTGATGATGCGCGATCGTACGACTTACGAACAACGAGTGAAAGAGTACTGTGAGAAATATGCGAAGCCGGAAGATATCGGAGCTCCGGCAGAGGAAAAATCAAGCGATGAGGAGCTGAGCGAAGATGATTACGGGTCCAGCGACGACGCAGTTGCAGGTCCAGCTGATCCTTAA 732 44.54 MEGLREAFTESESLTSRIGWPLLHKYSSTVFTRSCLNRPLAILLSLSSFSPLLSPNPSTKMSSPSKRREMDLMKLMMSDYKVEMMNDSMQEFYVGFHGPKESPYQGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTTYEQRVKEYCEKYAKPEDIGAPAEEKSSDEELSEDDYGSSDDAVAGPADP 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1278083 1279893 + Bma006942.1 Bma12g00072 91498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00072 243 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 63 243 - -
Bma12g00072 243 CDD UBCc 67 203 IPR000608 -
Bma12g00072 243 MobiDBLite consensus disorder prediction 206 220 - -
Bma12g00072 243 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 60 208 IPR000608 -
Bma12g00072 243 Pfam Ubiquitin-conjugating enzyme 70 202 IPR000608 -
Bma12g00072 243 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 133 149 IPR023313 -
Bma12g00072 243 SMART ubc_7 64 208 - -
Bma12g00072 243 MobiDBLite consensus disorder prediction 206 243 - -
Bma12g00072 243 Gene3D Ubiquitin Conjugating Enzyme 41 219 IPR016135 -
Bma12g00072 243 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 63 243 - -
Bma12g00072 243 SUPERFAMILY UBC-like 64 208 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00072 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - qsu:111986065 338.961
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01664 Bma12g00072 CCT
Bma07g01664 Bma12g00072 ECH
Bma05g00821 Bma12g00072 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00174 Bma-Chr8:2153793 Bma12g00072 Bma-Chr12:1278083 1.87E-102 dispersed
Bma12g00072 Bma-Chr12:1278083 Bma12g01029 Bma-Chr12:42378687 2.84E-107 dispersed
Bma12g00072 Bma-Chr12:1278083 Bma05g00821 Bma-Chr5:45575330 2.21E-124 wgd
Bma12g00072 Bma-Chr12:1278083 Bma07g01664 Bma-Chr7:52224666 2.80E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g14 Blo02g01112 . Bda06g00114 Bda08g00514 Bpe05g00648 . Bma07g01664 . Cmo06g01099 . . . Car02g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00821 Bma12g00072 . . . . . Car06g00910 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00072 Bma_Chr12 FPKM 10.107144 12.274779 17.569069 16.148088 25.933052 24.749075 23.655901 21.905552 21.786022 20.221836