Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00075 ATGAGCTTCCAGTTAGATCCAGACGACTGTGAACTGGAAAGTTCTGAAACAATGTTTGAAGGTAGCGATATATCATCTTTGGTGAGGTGGTTAAATGATCTGCTTCCTCATTTAAGTTTACCAGTGGAAACTTCAGATAAAGAATTGAGGGCATGTTTAAGTGATGGCACTGTTTTATGCAGCATCCTGAACAAATTATGTCCAGGTTCAATTGAAGCGAATGGCTCTTTACAACCCATTATCTCAAATGTGGAAAGCTTTCTGGCAGTTCTGGATGGATTAGGATTACCAAGCTTTGAACCGTCAGATTTGGAGCTGGGATCTATGGAGCCAATTCTGCAGTGCCTCAGGACTCTTAGAGCATCTTTTGATTTTGACGTTGAAGGAAAAGGTTCTCAAAATTATGCAAATAAAAAATGGAATATGACTAATGTAGAATCTTTTGCGGAATCAGATAACCAACATGGAGATATTTTTGCTCGTGGACATTCTAGTGAAAATGGAGAAGAGGCAATGAGAAACTTATATGATTTCAGATTTCAAGATTTTGAGAACATCACTGTTACGTCAGAGCCATCTATCGCTTCCCCTGGAAACGAGTCTCATGAGTGGTGTCAAATGGCACAAGGATGTCTTTCTGAAGTTACTATTGTAGAATTAATGAAAACAAAGAGCTTAAGTAATGCCTCTTTTCAATCACTTTTCAGCATAGTCAATGGAATCCTAGATGAAAGCATTGAAAGAAAAAATGGAGACGTTTCTCATCGGGTGGCATATTTGTTGAGGAAAGTTATGCAAGTGCTTGAGCAACGAATTTTAACTGAAGCAGAAAACTTGAAAAATCAAAATTCTGCTCATCACACCCGTGAAGAAAAATATAAATCTAAAATAAGAGTACTTGAAACCCTTGCAATTGGTACCGCAGAAGAAAATCAGGTTGTGATGAACCAGCTTCAAGAAATGAAGATTGAGAAGTTCAAACTAGAGAAGAAGAAAAAGCAGGACGAGGAGGATTTAGTGACACTGAAGAAACAAAAAGATCTTAGTGACAACAAGGTTTTGATACTAAAAGAGGAATTAGAAAATACCAAAAAAGCTCATGAAAATTATTGTATGCAATTAGAAGCAGATGCCGAGGCAGATAAAGTAGAGTTGGAGAATAAGTTAAATGAGCTTGGATCCCTTTTAACAAATTCCAGGTTGAAAGTTAAAGATCTTGAAACTTTTTCTAAATCAAAATCAAGTAGGTGGAAAAAAAGAGAGATCATTTACAAGAGGTTTATAGACTCACAGTTTGGAGCCTTACAGGTACACTTGTTTGTGTAG 1326 36.8 MSFQLDPDDCELESSETMFEGSDISSLVRWLNDLLPHLSLPVETSDKELRACLSDGTVLCSILNKLCPGSIEANGSLQPIISNVESFLAVLDGLGLPSFEPSDLELGSMEPILQCLRTLRASFDFDVEGKGSQNYANKKWNMTNVESFAESDNQHGDIFARGHSSENGEEAMRNLYDFRFQDFENITVTSEPSIASPGNESHEWCQMAQGCLSEVTIVELMKTKSLSNASFQSLFSIVNGILDESIERKNGDVSHRVAYLLRKVMQVLEQRILTEAENLKNQNSAHHTREEKYKSKIRVLETLAIGTAEENQVVMNQLQEMKIEKFKLEKKKKQDEEDLVTLKKQKDLSDNKVLILKEELENTKKAHENYCMQLEADAEADKVELENKLNELGSLLTNSRLKVKDLETFSKSKSSRWKKREIIYKRFIDSQFGALQVHLFV 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1396479 1399466 + Bma006947.1 Bma12g00075 91501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00075 441 Coils Coil 311 345 - -
Bma12g00075 441 PANTHER KINESIN-LIKE PROTEIN KLP-3 13 436 - -
Bma12g00075 441 Gene3D - 15 123 IPR036872 -
Bma12g00075 441 Pfam Calponin homology (CH) domain 26 120 IPR001715 GO:0005515
Bma12g00075 441 PANTHER KINESIN-4-LIKE ISOFORM X1 13 436 - -
Bma12g00075 441 ProSiteProfiles Calponin homology (CH) domain profile. 21 124 IPR001715 GO:0005515
Bma12g00075 441 SUPERFAMILY Calponin-homology domain, CH-domain 25 156 IPR036872 -
Bma12g00075 441 Coils Coil 357 395 - -
Bma12g00075 441 SMART ch_5 23 122 IPR001715 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00075 K10406 KIFC2_3; kinesin family member C2/C3 - vvi:100256435 426.017
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma12g00075 Bma14g00667 CCT
Bma05g00820 Bma12g00075 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00075 Bma-Chr12:1396479 Bma06g00477 Bma-Chr6:22396967 4.45E-15 dispersed
Bma12g00075 Bma-Chr12:1396479 Bma05g00820 Bma-Chr5:45530211 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00075 Bma_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 1.160017 0.505202 0.0 0.316611