Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00076 ATGGTTGAATCAATGGCTGCAACTCATCTTCTTGGCCACCCACCTCTCGTCGGAGGAAATTTAGTTAAGGACGTGTGTTGTAAGCGGAAATCTTCTAACCACTATCGGTGTTCCATAACAGAATTTTTTGGACGAAAGCTTATGATTTCTCATACTTCAACGAGATTGAAGGCCAATCGAGTTGTACTTTCACCAATTATGTCTCTCGCAATGGAGGTTACGAAAGAGTTATCCTCATATAAACATGACCGTTTGCCTGAGGATTGGAATTATGACATTGATACTGGATTTGACCGAAAACCCGGTTTATGGCCTCCGAAAAACAAAGCTGATAACCCTTCTTTACATAATCCTCTGCTTCGTCAAGAGAGAATGGGCTGTGGTTGGTTGGGTGCCATCTTTGAATGGGAAGGAGTCTTAATAGAGGATAGTTCTGAGCTCGAAAAGCAAGCATGGCTGGCTCTTTCTCAGGAAGAAGGAAAATCTCCACCTCCTGCGTTTATTCTCCAAAGAATCGAAGGGATGAAGAATGAACAAGCGATATCTGAAGTTCTTTGCTGGTCTAGAGACCCTGCACAAATGAGAAGAATGGCTTCTAGGAAGGAAGAATTTTATCAAGCCTTGCAAGGCGGAATATATCAGGTTCGAGCCGGGTCAAAAGAATTCGTCAATATCTTGATGCATTACAAAATCCCAATGGCGTTGGTGTCGACCCGTCCAAGACAGACACTCGAAACTGCAATTGGAACGATTGGAATCGAAGGTTTCTTCAACGTAATTGTGGCTGCCGAGGATGTTCATAGGGGGAAGCCAGACCCAGAAATGTACATATATGCTGCTCAGCAGCTCAATTTCATTCCTGAAAGATGCATCGTGATTGGAAACTCAAATCAGACCGTGGAGGCTGCCCACGATGCGCGAATGAAGTGTGTAGCAGTTGCCAGTAAGCATCCGGTCTATGAACTTGGAGCTGCTGATTTGATTGTGAGGCGCCTCGATGAACTATCAGTCGTCGATTTAAAGAGTCTTGCCGATATCGAATCCGCCGAGTTCGTTCCGGGGGAGCCGGAGTTGGAGGTGGAAGAGGAATACGATGATCCGCCTCCATCAACAGTTGCAGCAGTGGATGACAATTTCTGGTAA 1143 45.32 MVESMAATHLLGHPPLVGGNLVKDVCCKRKSSNHYRCSITEFFGRKLMISHTSTRLKANRVVLSPIMSLAMEVTKELSSYKHDRLPEDWNYDIDTGFDRKPGLWPPKNKADNPSLHNPLLRQERMGCGWLGAIFEWEGVLIEDSSELEKQAWLALSQEEGKSPPPAFILQRIEGMKNEQAISEVLCWSRDPAQMRRMASRKEEFYQALQGGIYQVRAGSKEFVNILMHYKIPMALVSTRPRQTLETAIGTIGIEGFFNVIVAAEDVHRGKPDPEMYIYAAQQLNFIPERCIVIGNSNQTVEAAHDARMKCVAVASKHPVYELGAADLIVRRLDELSVVDLKSLADIESAEFVPGEPELEVEEEYDDPPPSTVAAVDDNFW 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1406975 1408117 + Bma006948.1 Bma12g00076 91502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00076 380 PANTHER BETA-PHOSPHOGLUCOMUTASE-LIKE ISOFORM X1 2 378 - -
Bma12g00076 380 Gene3D - 132 330 IPR023214 -
Bma12g00076 380 SUPERFAMILY HAD-like 132 335 IPR036412 -
Bma12g00076 380 Gene3D Putative phosphatase; domain 2 143 215 IPR023198 -
Bma12g00076 380 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 199 313 IPR006439 -
Bma12g00076 380 MobiDBLite consensus disorder prediction 355 380 - -
Bma12g00076 380 CDD HAD_BPGM-like 192 315 - -
Bma12g00076 380 Pfam Haloacid dehalogenase-like hydrolase 141 313 IPR041492 -
Bma12g00076 380 PANTHER 5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE, CHLOROPLASTIC 2 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00076 K22912 PYRP2; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104] - jre:109014876 596.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00205 Bma-Chr3:1555144 Bma12g00076 Bma-Chr12:1406975 4.00E-28 dispersed
Bma12g00076 Bma-Chr12:1406975 Bma14g00873 Bma-Chr14:9865930 1.12E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g323 . . Bda06g00102 . . Bpe07g00109 . . . Cmo16g00641 . . . . . Cpe14g00503 . . . . . . . . Cla07g00768 Cam07g0825 Cec07g0883 Cco07g0860 Clacu07g0804 Cmu07g0809 Cre07g1163 . . Cone6ag0778 Cone9ag0783 . . . Cme07g01627 . . . . . . . Bma12g00076 . . . . Cma16g00591 . . . . . . . . . . . . . . . . . . . . Chy07g01214 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007776 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00076 Bma_Chr12 FPKM 2.815778 3.889488 1.434792 1.556557 2.054885 1.477983 2.223802 0.0 0.0 0.0