Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00086 ATGCATTATAAAATGGAAGAAGATAGTCAAATCAAGAAAGAAAGTTATGCTTCTAATATTCACCTCATACGAGAATCGCATTTTCGCATCAAGTCTTTCATACATCAAACTCCAGTGCTGTCCTCCAAATCTATTAATGCGGCTTCAGGAAAGCAACTATTTTTTAAATGTGAATGTTTTCAGAAGGGTGGATCGTTTAAATTCAGAGGAGCCTGCAATGCTGTATTTTCGCTAGACAATCACGAGGCTGTTAAAGGGGTTGTAACTCACAGCAGTGGTAACCATGCAGCAGCATTAGCTCTCGCTGCGAAACTTCGAGGAATTCCTGCCTATGTTGTCATTCCAAAAAATGCTCCGAAATGCAAAGTTGAAAATGTGATCCGATATGGTGGACAGATTATTTGGTGTGAGCCGACATTGCAGTCCAGGGAGAGTGCTGCTTCCAAGGTTATGGAAGAAACTGGTGCAGTTCTCTTACATCCTTTCAATGATCAACGCATAATAAGTGGGCAAGGCACCATTGTGTTAGAGCTTTTAGAGCAAGTACAACAAATCGACACACTAATCGTTCCCATTAGTGGAGGTGGTTTGATATCAGGAGTAGCACTGGCTGCAAAGTCTATCAACCCTGCTATTCACATTTTGGCTGCCGAACCTCGGGGAGCTAACGATGCAGCACAGTCCAAAGAGGCTGGTAGAATAATCACTTTGCCCGAGACTAACACCATAGCCGATGGTCTTCGAGCTTTCCTTGGTGATCTTACATGGCCAATTGTTCGAGATCTTGTCGATGATGTAATAATTGTAGAAGACAAGGATATAATTGAAGCCATGAGACTCTGCTTCAAGATTCTAAAGATTGTTGTCGAACCTAGTGGAGCGATCGGCCTTGCAGCTGTTATGTCAGATAATTTCAAGAAACACCCGATTTGGAAAAATTGCAACAGAATAGGAATTATATTTTCTGGAGGTAATGTTGATCTTGGAGCCTTGTGGGATTCATTTAAAATTTGA 1014 41.62 MHYKMEEDSQIKKESYASNIHLIRESHFRIKSFIHQTPVLSSKSINAASGKQLFFKCECFQKGGSFKFRGACNAVFSLDNHEAVKGVVTHSSGNHAAALALAAKLRGIPAYVVIPKNAPKCKVENVIRYGGQIIWCEPTLQSRESAASKVMEETGAVLLHPFNDQRIISGQGTIVLELLEQVQQIDTLIVPISGGGLISGVALAAKSINPAIHILAAEPRGANDAAQSKEAGRIITLPETNTIADGLRAFLGDLTWPIVRDLVDDVIIVEDKDIIEAMRLCFKILKIVVEPSGAIGLAAVMSDNFKKHPIWKNCNRIGIIFSGGNVDLGALWDSFKI 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1558771 1560647 + Bma030491 Bma12g00086 91512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00086 337 Gene3D - 66 162 IPR036052 -
Bma12g00086 337 Pfam Pyridoxal-phosphate dependent enzyme 32 322 IPR001926 -
Bma12g00086 337 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 58 71 IPR000634 GO:0006520|GO:0030170
Bma12g00086 337 Gene3D - 29 327 IPR036052 -
Bma12g00086 337 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 23 329 IPR036052 -
Bma12g00086 337 PANTHER - 36 335 - -
Bma12g00086 337 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 36 335 - -
Bma12g00086 337 CDD Thr-dehyd 23 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00086 K12235 SRR; serine racemase [EC:5.1.1.18] - qsu:112010501 500.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01466 Bma-Chr7:50330646 Bma12g00086 Bma-Chr12:1558771 1.69E-38 dispersed
Bma10g00066 Bma-Chr10:614420 Bma12g00086 Bma-Chr12:1558771 1.82E-39 dispersed
Bma12g00086 Bma-Chr12:1558771 Bma14g00427 Bma-Chr14:4996776 1.96E-32 dispersed
Bma12g00086 Bma-Chr12:1558771 Bma12g00087 Bma-Chr12:1568216 1.34E-44 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g337 . Blo03g00210 Bda06g00086 . . Bpe07g00113 . . . . . . . . . . Cpe05g00324 . . . . . . . . . . . . . . . . . Cone9ag0772 . Csa05g00294 Chy09g01212 . . . . . . . . Bma12g00086 . . . . . . . . . Bhi12g00237 . . . . . . . . . . . . . Lsi09g00273 . . Cme09g01749
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013496 1 2 1 2 1 1 0 0 1 1 0 1 0 1 1 0 0 2 1 1 1 1 0 1 1 0 1 1 2 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00086 Bma_Chr12 FPKM 86.958336 88.085442 78.764229 79.511848 97.66288 99.763077 85.778137 154.842743 150.605423 145.568192