Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00096 ATGGCTTCCTCCGAGGCCATCGTGGATTCTACGCCGTTGCTGGCGAATCATGGCGGGTCTTCTGGTGAAACGAATTCCAGTCGTCGATTTGTTCAGAGACAGAGCCTGCGTCAGGCGGCGAGGTTTTTGAGGCAAACGAGCAGTCGGGGGATGATGCGCGAGTCTTCGATGCGAGTGAGAGAGGCTGCAGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAACCGGTTGTGATTCTAGATATTGTTTGGAATTTCGCGTTTGTGGTTGTAGCTGCTACAATGCTGGTTATGAGCAGGGCTGAGTCGCCGGATGTGCCCTTGAGACTGTGGCTGGTAGGATATGGTTTTCAATGCGTTCTTCATATGGTGTGTGTTTGTTTCGAATATAGACGTCGTAGACACCGGCTCCCTACGCAGATGGTTAATTCAGTTGAAGGGGAAAGAGGAGCTGCTGAGCAATCAGGCTCTGGATCGAGAGAGGATTCACGGCCTGTTGCTAAGCATCTCGAATCGGCAAATACAATGTTTTCGTTTATCTGGTGGATTATTGGGTTCTATTGGGTATCAGCAGGAGGTCAAGGTTTGGCACATGCCTCTCCTCAGCTTTACTGGTTGTGCATAATTTTCCTAGGTTTTGATGTCTTCTTTGTCGTTTTTTGTGTTGCTCTGGCGTGTGTGATCGGAATTGCTGTTTGTTGCTGTCTTCCATGTATCATTGCGCTTCTATATGCTGTGGCTGACCAGGAAGGAGCATCCCGAGAAGACATTGAACAGTTGTCTAAATTCAAATTCAGAAAATGTGGAGATTCGGATAAGCTATCCGGCGATGTACAAGAACCTTCGGGAGGAATAATGACAGAATGCAGCACAGATTCACCCATCGAACACGTTCTCTCACACGAAGATGCAGAATGCTGCATCTGCATTTCTGCTTATGAGGATGGAGTTGAGCTGAGGGAGCTTCCTTGTGGCCACCATTTTCACTGTACATGCGTAGATAAATGGCTCCACATTAATGCTACTTGTCCTCTCTGTAAATACAACATTTTGAAGTTTAGTAACCATGGACAAGACGAAGTTTAG 1095 47.58 MASSEAIVDSTPLLANHGGSSGETNSSRRFVQRQSLRQAARFLRQTSSRGMMRESSMRVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATMLVMSRAESPDVPLRLWLVGYGFQCVLHMVCVCFEYRRRRHRLPTQMVNSVEGERGAAEQSGSGSREDSRPVAKHLESANTMFSFIWWIIGFYWVSAGGQGLAHASPQLYWLCIIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIALLYAVADQEGASREDIEQLSKFKFRKCGDSDKLSGDVQEPSGGIMTECSTDSPIEHVLSHEDAECCICISAYEDGVELRELPCGHHFHCTCVDKWLHINATCPLCKYNILKFSNHGQDEV 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1629114 1631506 - Bma006967.1 Bma12g00096 91522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00096 364 Coils Coil 361 364 - -
Bma12g00096 364 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Bma12g00096 364 SMART ring_2 309 349 IPR001841 -
Bma12g00096 364 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 364 - -
Bma12g00096 364 PANTHER TARGET OF ERK KINASE MPK-1 2 364 - -
Bma12g00096 364 SUPERFAMILY RING/U-box 299 356 - -
Bma12g00096 364 MobiDBLite consensus disorder prediction 148 168 - -
Bma12g00096 364 Pfam Ring finger domain 308 350 IPR001841 -
Bma12g00096 364 CDD RING-H2_RNF111_like 308 352 - -
Bma12g00096 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 358 IPR013083 -
Bma12g00096 364 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00096 Bma-Chr12:1629114 Bma14g01932 Bma-Chr14:41238035 3.20E-114 dispersed
Bma02g01042 Bma-Chr2:51943709 Bma12g00096 Bma-Chr12:1629114 8.58E-150 transposed
Bma12g00096 Bma-Chr12:1629114 Bma05g00809 Bma-Chr5:45420274 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00096 - - jre:108984426 558.91