Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00103 ATGGGTCTGGAGATGGAATCCATGGCGGCCGCCATTGGCGTCTCGATCCCTGTCCTCCGATTCTTGCTCTGCTTCGTCGCCACCATACCGGTGAGCTTTCTATGGCGACTCATTCCGGGTCGACTCGCTAAGCACCTTTACTCTGCTGGGTCAGGCGCTCTGCTTTCTTATCTCTCGTTTGGATTCTCTTCTAACCTCCATTTCTTAGTTCCGATGTTTCTTGGTTATGCCTCTATGGCTCTGTATCGCGCTCGGTGTGGTATACTTACCTTCTTTTTGGGATTCGGCTATCTAATTGGTTGCCATGTTTATTATATGAGTGGGGATGCTTGGAAGGAAGGAGGTATCGACGCCACTGGAGCTTTAATGGTGTTAACGCTGAAAGTAATCTCGTGTTCTATCAATTACAATGACGGGATACTGGAAGAAGATGGTTTACGTGACGCTCAGAAGAAAAACCGATTGATCAAGCTGCCTTCATTGATAGAGTACTTGGGTTACTGTCTCTGCTGTGGCAGCCATTTTGCCGGGCCTGTTTATGAAATGAAAGATTATCTCGACTGGACCGAAGGAAAAGGGATCTATAGCCATCCAAACAAAGGGCCATTTCCATCACCTTATGGCGGCACAATTAGAGCTATTCTCCAAGCAGGTCTTTGCATGGCGTTGTATATAAACTTGGCACCGCTATTTCCACTAACACGCTTTACGGATCCCATTTACAAAGAATATGGATTTTGGAAGCGGCTCGGTTATCAATATATGTCCGGCTTTACGGCACGGTGGAAATATTATTTCATCTGGTCAATTTCAGAGGCCTCTTTAATTGTTTCTGGTTTGGGTTTTAGCGGTTGGACTGAATCTTCTCCTCCCAAACCACGTTGGGACCGTGCTAAAAACGTAAACATTCTTGGTGTTGAGTTGGTGAAGAGTTCGGTCGAATTGCCTCTTGTTTGGAACATTCAGATCAGCACCTGGCTCCGTCATTATGTCTATGAGAGGCTTATCCAGAAGGGAAAGAAACCTGGCTTCTTCCAGCTCTTGGCTACACAGACTGTCAGTGCTGTTTGGCATGGACTGTATCCTGGCTACATCATCTTCTTCGTCCAGTCTGCTTTGATGATTGCAGGTTCAAGAGGTATTCGCTCACTACTCTTAAGTTCCCTGCCATTTTTGCCTTCTTTTATGATGTTTGTTCTCTTTGCTTTGCTCCAATCAGTCATTTACAGATGGCAGCAAGCTTTTCCTCCGCCTCTTAAGACTGTACTTGGGTTTTTCAACTTTGCTTATTCACTTCTGGTTCTGAACTACTCTTGTGTTGGTTTCATGGTGTTGAGCTTGCACGAAACGATTGCGTCCTATGGAAGTGTGTACTATATTGGAACCATTCTTCCCATACTCCTCATCCTACTCAGCTACGTTATTAAACCCGCCAGGCCGGGCAGACCAAAAGCTCGAAAAGATCAGTGA 1470 45.71 MGLEMESMAAAIGVSIPVLRFLLCFVATIPVSFLWRLIPGRLAKHLYSAGSGALLSYLSFGFSSNLHFLVPMFLGYASMALYRARCGILTFFLGFGYLIGCHVYYMSGDAWKEGGIDATGALMVLTLKVISCSINYNDGILEEDGLRDAQKKNRLIKLPSLIEYLGYCLCCGSHFAGPVYEMKDYLDWTEGKGIYSHPNKGPFPSPYGGTIRAILQAGLCMALYINLAPLFPLTRFTDPIYKEYGFWKRLGYQYMSGFTARWKYYFIWSISEASLIVSGLGFSGWTESSPPKPRWDRAKNVNILGVELVKSSVELPLVWNIQISTWLRHYVYERLIQKGKKPGFFQLLATQTVSAVWHGLYPGYIIFFVQSALMIAGSRGIRSLLLSSLPFLPSFMMFVLFALLQSVIYRWQQAFPPPLKTVLGFFNFAYSLLVLNYSCVGFMVLSLHETIASYGSVYYIGTILPILLILLSYVIKPARPGRPKARKDQ 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1677757 1681052 + Bma006975.2 Bma12g00103 91529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00103 489 Pfam MBOAT, membrane-bound O-acyltransferase family 104 384 IPR004299 -
Bma12g00103 489 PANTHER PORCUPINE 3 403 - -
Bma12g00103 489 PANTHER PORCUPINE 395 489 - -
Bma12g00103 489 PANTHER MEMBRANE BOUND O-ACYL TRANSFERASE, MBOAT-RELATED 3 403 - -
Bma12g00103 489 PANTHER MEMBRANE BOUND O-ACYL TRANSFERASE, MBOAT-RELATED 395 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00103 K13519 LPT1, ALE1; lysophospholipid acyltransferase [EC:2.3.1.51 2.3.1.23 2.3.1.-] - csv:101209553 776.933
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01635 Bma12g00103 CCT
Bma05g00806 Bma12g00103 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00103 Bma-Chr12:1677757 Bma05g00806 Bma-Chr5:45406935 0 wgd
Bma12g00103 Bma-Chr12:1677757 Bma07g01635 Bma-Chr7:51951886 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g399 . Blo03g00194 Bda06g00072 . Bpe05g00629 Bpe07g00127 Bma07g01635 . Cmo06g00727 Cmo16g01049 . . . . . . . . . . . . . . Cla10g00350 Cam10g0362 Cec10g0380 Cco10g0375 Clacu10g0366 Cmu10g1202 Cre10g0617 Cone8ag0329 . Cone6ag0751 Cone9ag0754 Lsi07g01413 . . Cme06g02699 . Blo19g00309 . Bda09g00053 Bpe08g01475 . Bma05g00806 Bma12g00103 . . . . Cma16g01006 Car06g00632 . Cpe08g00804 . . . . . . . . . . . . . . . . Csa03g00372 Chy06g01941 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003790 3 1 2 3 3 1 2 1 1 1 2 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00103 Bma_Chr12 FPKM 46.208099 52.937279 54.397972 53.577339 71.263145 63.978539 61.213558 29.633768 33.089375 30.501358