Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00104 ATGGCGTCGAGTTCTTCTCCGAGAAAACACTCTCTTTACAGGGGCATTCGTTGCAGAAGCGGGAAATGGGTTTCGGAAATCCGAGAGCCACGTAAAACGAATAGAATTTGGCTCGGGACCTTCCCCTCCCCGGAAATGGCGGCTGCCGCGCACGACGTCGCTGCCTTAGCGCTCAGAGGAAACGACGCCACTCTTAACTTCCCGGCGCTGGTTGGTTCTTATCCAGTTCCGGCTTCTACCTCACCGGCCGATATCAGAGCGGCCGCCTTAGCTGCCGCGACGCTGATGAAAAGGAGTTCGAAAGATGATGATCGGTCAGAGGAGAAGTTTAGTAAAGTGAGAGATGAATTTCTCGACGAGGAGGAGATTTTCGACATGCCCAATTTGCTAGTGGACATGGCGGGAGGAATGTTAATGTCGCCGCCGAGAATGAACTTCCCGCCGGACCACGAGCCGGCTGGGTTTTCCGATGGACTAGAGCGTTTATGGAGTCATTTTTGA 501 53.69 MASSSSPRKHSLYRGIRCRSGKWVSEIREPRKTNRIWLGTFPSPEMAAAAHDVAALALRGNDATLNFPALVGSYPVPASTSPADIRAAALAAATLMKRSSKDDDRSEEKFSKVRDEFLDEEEIFDMPNLLVDMAGGMLMSPPRMNFPPDHEPAGFSDGLERLWSHF 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1683182 1683682 + Bma006976.1 Bma12g00104 91530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00104 166 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Bma12g00104 166 PRINTS Ethylene responsive element binding protein signature 50 70 IPR001471 GO:0003700|GO:0006355
Bma12g00104 166 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Bma12g00104 166 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Bma12g00104 166 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Bma12g00104 166 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Bma12g00104 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 166 - -
Bma12g00104 166 PANTHER ETHYLENE RESPONSE FACTOR 1 166 - -
Bma12g00104 166 Pfam AP2 domain 12 60 IPR001471 GO:0003700|GO:0006355
Bma12g00104 166 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00104 Bma-Chr12:1683182 Bma14g02068 Bma-Chr14:44050117 2.90E-43 dispersed
Bma12g00104 Bma-Chr12:1683182 Bma05g00804 Bma-Chr5:45399487 1.74E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58084 PF00847 AP2 4.10E-10 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00104 - - jre:108990846 205.682