Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00105 ATGGATCTTCACAGCGATCTAACCCAGCCTAGCTCGCCGGGGAAGGTCGTTGAAAAACCGGAGAGTTCTGGCTTGGGTCGAAGAGCTTCTCATTGTGACGAAGAAGTAATATTGGCGACGAACCGACCGAAGAAGCTAGCCGGGAGGAGAGTGTTTAAGGAGACGAGACATCCCGTTGAGAAGATATCAGTCATGACAATTGATATGGTTAGTGAAGTGACTGACCCCAAGTTGGGACTTCCAAATCCTTCTTCACAGTGCTCCACATGCAGTGCCAAGGATTTGAAACATTGTGAAGGTCATTTTGGTGTTATTAAATTTCCGTACACCATAATCCATCCATATTTTCTGTCGCAAGTTGTACAAGTTTTGAATAAAATTTGCCCTGGGTGTAAAAATGTAAAGGAAGAAACGTGGGTCAAGGAGTTGGATTCAAGATCTAGTGGGCAAGAACCTAAGGGTTGCAAGTATTGTTTTATTAAAGGGTGGTATCCAAGTGTGAGGTTTAAGGTTTCCTCCAATGATTTATTTAAAAGAAGTGTCATAATAGCAGAGGTTAAAGAAAGGGTGTCAAGAAAATTTCAAAAGAGAAATTTGAGAGGAGTATTACCTGCTGATTATTGGAATTTTATTCCAAAAGACGATCAGCAAGAAGATGCCTATAATACCGCTACCAGAAAAGTTCTTTCGCATGCCCAGGTTCGTTATCTGTTGAATGATGTAGATCCAAAGTTTATCAAAAGGTTTGTTTCAAGGACTGAATCACTGTTCCTTAATTGTTTTCCTGTGACGCCGAATAGCCATCGTGTCACTGAAGTTACATTTGCCTTAACAAATGGCCAGCGATTGGTTTTCGACGAAAGGACTAGGGCTTACAAGAAGTTGGTTGATTTCAGAGGGATAGCTAATGAGTTGAGTTCTCGCGTTTTGGACTGTTTAAAATTTTCCAAGGCAAGCTGCAAATCTGGTTTATTCCATAGTTTTATGATATTTCTTAACTCAGAGAAGATGGTCAATAAAGATTTGGATGCTGCCCAAGAGAAAAGGATTAAGGACACTGCCACTAGCTCATCTGGTCTGAGATGGGTCAAAGATGTTGTTTTAGGAAAGCGGAGTGATCATTGTTTCCGTATGGTCGTCGTTGGTGATCCTAACATTAAGCTCAGTGAAGTTGGTATACCCTGTCATGTTGCAGAGAGGCTTCAAGTGTCTGAGAATTTGAATGCTTGGAACATGAAAAAGTTGAGCACTTCTTGTTTTTTACGACTCGTTGAGAAAGGGGAGCTTTTTGTACGTCGAAATGGTCATCTAGTTCGTGTCCGACATGATTTTGAACTTCATATTGGAGACACTATATATAGGCCACTAAGTGATGGAGATATCATTTTGATTAATAGGCCTCCATCTATACACCAGCATTCTCTTATAGCTTTAACTGCGAGAGTCCTTCCTGTGAATTCCGTTATTTCCTTAAACCCACTTTGTTGTTCTCCTTTCCGTGGCGATTTTGATGGTGATTGCTTTCATGGGTACGTTCCTCAATCAGTTGATGCCAGAGTAGAGCTCAAAGAGCTTGTTTCTCTAGATAGACAATTAATTAATGGGCAAACTGGTAGAAACCTGCTCTCACTTAGTCATGATAGCTTAACCGCTGCTCATTTGGTGTTAGAGAATGGGGTTTTCTTAGACCTTTTTGAAATTCAGCAGCTGCAAATGTCCTCTTTGCGGCAATTACCATCACCAGCGATTGTAAAATCTTCTTCACCTAATAGTTGTGTCTGGACTGGGAAACAATTATTCAGCATGCTCCTACCTCGGCACTTCAATTATGAAAGTTCTTCTAATAGTGTCGATGTTAAAGATGGCGAACTTATATCTTCAGAAGGGTCCTTTTGGCTTCGTGACACCAATGGAAACATTTTCCAAAACCTTGTTGAATATTGTGAGGGAGGGACACTTGACTTATTGTATGCTGCTCAGGATGTTCTTTGTGAATGGATTTCTGATAGGGGCTTCACTGTTTCACTTGAAGATTTATACCTCTCTGCTGACTTGCATTCCCAAAAAAACATGATGGATGATATTTTTTATGGTTTGCAAGAAGCAGATCAGACATGTCAGTTCAAACAGTTGATGGTGAATGCTTATCGGGATTTACTTATTGGAGAGAGCGAAGATGATGAAAATCCTGTCTTTATGGAAGTGGAACAGTTATGTCATGAGAAGCAGAAATCTGCTGCTTTGAGTCAGGCTTCCGTTGATGCTTTTAAGTATGTCTTTCGAGACATCCAAAGTTTAGTGTTCAAGTATGCTAGTAAAGATAATTCATTTCTAACGATGTTTAAAGCTGGAAGCAAGGGTAACCTGATAAAACTAGTTCAACACAGCATGTGTCTTGGCTTGCAACATTCGCTTGTCCCATTATCATTTGCTATGCCCCATCAACTCTCTTGTTCTGCATGGAATAATCAAAAGGCATATGGTTTTCGAAAGGCTGATGGTTCCCCAGATTGTTCCCAGTCTTACATCCCATATGCGGTGGTTGAAAATTCGTTTCTTAGAGGTTTAAATCCTTTGGAGTGTTTTGTTCATTCAGTTACAAACCGAGACAGTTCTTTTAGCGACAATGCTGATCTTCCCGGAACTTTAACACGTAGACTTATGTTTTTCATGCGAGATTTGAGCATTGCGTATGATGGAACAGTGAGAAATGCATATGGGAATCAGATTGTTCAGTTCTTATGTGACATTGATTTAGACTCATCCACTCTTCATGGCAATGTTGATGAATTATTTGGGGACAGTGATGGGTCTTGTAATTTCATAGGTGGTCAGCCTCTTGGTTCATTGTCTGCTTGTGCTATATCTGAAGCTGCGTATAGTGCTTTGGATCAACCAATCAGCTTACTAGAAGCGTCCCCATTGCTAAATTTAAAGAAAGTGTTGGAGTGTGGCTCAAAGAGGAACTTATCCAACCAAACCTTTTCGCTGTTTTTTTCGGAGAAACTAAGAAAGCAAAGACATGGTTTTGAATATGGAGCCTTAGAAGTTAAGAAACATCTGGAGAGAGTAACATTTGCTGATGTGGTATCGAGTGTCATGATATTACCTTGTCGGAAGCCAAATGACAGTCCTTGGGTTTGCCATTTTCATTTACTCAAGGTTGTACAATCTTTAACTATTTATTTCTCTCATGCCTTTTTTGTTCTTTTTTTTAATGAAAACCTGCTCTTTCAGGAAAATGTACAGGAAAAGAAGGCTTACTATCTAGTCTTTTTGATGTTGCCTATAATTGGCAGGAAGTGTGCTGAAGCCAGTTTGCACAAAGAGGATAGTGAAATTTTTTGCTTTACTGCAAATGTAGCTGAAAACTCCAAAAATTCGACCTTGCCGTTTGATTCAGTTCGTGATTCACTGGTTCCTTACCTTCTTGCAACTGTAATAAGTGGATTTAAAGAAATAAAAAAGGTGGACATTCTATGGAGTGATCGCTCAAAAGTGTCGAAACCTCGCCATGATTATTCTGGCGAACTCTATTTGAGGGTGGAAATGAGCGGAGAGTGTGGTAGAACAAGACCATGGGATGTTCTAATGGATAATTGTCTTCAAATAATGGATATGATCGATTGGTCCCGAAGTCATCCCGATAACATTCACGACTTCTGTTTGGCACATGGGATCGATGCTGGATGGCATTATTTCCTCAAAAGTTTGGACTCTGCCATATCTGACAGTGGGAAAACTGTACTTCCTCAGCATTTGCTGCTTGTAACTAATTGCCTATCAGCTACAGGAGAGTTTGTCGGGTTAAATGCTACTGGCATTGGTCGTCAAAGAGACTATTCTTCGATAAAATCACCCTTTATGCAAGCTTGTTTATCTAATCCTGGTGCTTCCTTCATCAAAGCTGCGAAAGGTGGAGTTTCGGATGATCTTCATGGGAGCCTAGACTCATTGGCATGGGGAAAAGTTCTGCCCATGGGAACCGGTTCAGAGTTCGAACTAATTTATTCTGGAAAGGATCATACACTTGACAAGCCAGTTGATGTATTCGAACAACTGAGAAGTCATGCCGTTTTGGATAAGGAGGTCGTAAAGGTTACAATATCCGACCAAAACAAAAAAGCCGATAAATTTGTGTCTCAGTTGTTGCATAAAAATGGTGGGGCTGCCTTGAACGGATATAAAAAGCTGGATAGTATATCAAAATCATTCTTGAGAGAAGTTTTGACGCTGAATGATGTTATGAAGCTATCTAAAAAATTGAAGAGCATATTACACAAGTACCCGATTAATCATAGGTTAAATGAAGTGGAGAAGTCAACCTTGTTGATGGCTTTGTATTTTCACCCGCGACGGGATGAAAAAATGGGTGCTGGAGCTCAGGACTTCAAGGTCGGACGACACGCCAAGTATGAAAACACGCGATGCTTTACTGTGGTGCGAACGGACGGGTCAGTAGAAGATTTTTCGTACCGAAAGTGTGTTCTTGGTGCGCTAGAGATAATTGCTCCCAAAAGAGCAAAGAGCTATCAATCAAAATGGCTAAATGACAGTGATTTGTAG 4566 40.41 MDLHSDLTQPSSPGKVVEKPESSGLGRRASHCDEEVILATNRPKKLAGRRVFKETRHPVEKISVMTIDMVSEVTDPKLGLPNPSSQCSTCSAKDLKHCEGHFGVIKFPYTIIHPYFLSQVVQVLNKICPGCKNVKEETWVKELDSRSSGQEPKGCKYCFIKGWYPSVRFKVSSNDLFKRSVIIAEVKERVSRKFQKRNLRGVLPADYWNFIPKDDQQEDAYNTATRKVLSHAQVRYLLNDVDPKFIKRFVSRTESLFLNCFPVTPNSHRVTEVTFALTNGQRLVFDERTRAYKKLVDFRGIANELSSRVLDCLKFSKASCKSGLFHSFMIFLNSEKMVNKDLDAAQEKRIKDTATSSSGLRWVKDVVLGKRSDHCFRMVVVGDPNIKLSEVGIPCHVAERLQVSENLNAWNMKKLSTSCFLRLVEKGELFVRRNGHLVRVRHDFELHIGDTIYRPLSDGDIILINRPPSIHQHSLIALTARVLPVNSVISLNPLCCSPFRGDFDGDCFHGYVPQSVDARVELKELVSLDRQLINGQTGRNLLSLSHDSLTAAHLVLENGVFLDLFEIQQLQMSSLRQLPSPAIVKSSSPNSCVWTGKQLFSMLLPRHFNYESSSNSVDVKDGELISSEGSFWLRDTNGNIFQNLVEYCEGGTLDLLYAAQDVLCEWISDRGFTVSLEDLYLSADLHSQKNMMDDIFYGLQEADQTCQFKQLMVNAYRDLLIGESEDDENPVFMEVEQLCHEKQKSAALSQASVDAFKYVFRDIQSLVFKYASKDNSFLTMFKAGSKGNLIKLVQHSMCLGLQHSLVPLSFAMPHQLSCSAWNNQKAYGFRKADGSPDCSQSYIPYAVVENSFLRGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDLSIAYDGTVRNAYGNQIVQFLCDIDLDSSTLHGNVDELFGDSDGSCNFIGGQPLGSLSACAISEAAYSALDQPISLLEASPLLNLKKVLECGSKRNLSNQTFSLFFSEKLRKQRHGFEYGALEVKKHLERVTFADVVSSVMILPCRKPNDSPWVCHFHLLKVVQSLTIYFSHAFFVLFFNENLLFQENVQEKKAYYLVFLMLPIIGRKCAEASLHKEDSEIFCFTANVAENSKNSTLPFDSVRDSLVPYLLATVISGFKEIKKVDILWSDRSKVSKPRHDYSGELYLRVEMSGECGRTRPWDVLMDNCLQIMDMIDWSRSHPDNIHDFCLAHGIDAGWHYFLKSLDSAISDSGKTVLPQHLLLVTNCLSATGEFVGLNATGIGRQRDYSSIKSPFMQACLSNPGASFIKAAKGGVSDDLHGSLDSLAWGKVLPMGTGSEFELIYSGKDHTLDKPVDVFEQLRSHAVLDKEVVKVTISDQNKKADKFVSQLLHKNGGAALNGYKKLDSISKSFLREVLTLNDVMKLSKKLKSILHKYPINHRLNEVEKSTLLMALYFHPRRDEKMGAGAQDFKVGRHAKYENTRCFTVVRTDGSVEDFSYRKCVLGALEIIAPKRAKSYQSKWLNDSDL 1521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1687320 1703922 + Bma006977.1 Bma12g00105 91531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00105 1521 Gene3D - 365 535 - -
Bma12g00105 1521 Pfam Protein of unknown function (DUF3223) 1423 1496 - -
Bma12g00105 1521 Gene3D RNA polymerase ii 402 454 - -
Bma12g00105 1521 MobiDBLite consensus disorder prediction 1 16 - -
Bma12g00105 1521 Pfam RNA polymerase Rpb1, domain 4 747 805 IPR007083 GO:0003677|GO:0003899|GO:0006351
Bma12g00105 1521 CDD RNAP_IV_RPD1_N 60 903 IPR040403 -
Bma12g00105 1521 MobiDBLite consensus disorder prediction 1 28 - -
Bma12g00105 1521 Pfam RNA polymerase Rpb1, domain 3 532 679 IPR007066 GO:0003677|GO:0003899|GO:0006351
Bma12g00105 1521 Gene3D RNA polymerase Rpb1, domain 3 536 682 IPR042102 -
Bma12g00105 1521 PANTHER DNA-DIRECTED RNA POLYMERASE 55 1410 IPR045867 GO:0003899|GO:0006351
Bma12g00105 1521 Pfam RNA polymerase Rpb1, domain 1 73 269 IPR007080 GO:0003677|GO:0003899|GO:0006351
Bma12g00105 1521 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 67 1335 - -
Bma12g00105 1521 Gene3D - 708 856 IPR038120 -
Bma12g00105 1521 Pfam RNA polymerase Rpb1, domain 5 855 1278 IPR007081 GO:0003677|GO:0003899|GO:0006351
Bma12g00105 1521 Gene3D - 1408 1498 - -
Bma12g00105 1521 Pfam RNA polymerase Rpb1, domain 2 369 527 IPR000722 GO:0003677|GO:0003899|GO:0006351
Bma12g00105 1521 SMART rpolaneu7 254 556 IPR006592 GO:0003677|GO:0003899|GO:0006351
Bma12g00105 1521 Gene3D RNA polymerase II, clamp domain 57 145 IPR044893 -
Bma12g00105 1521 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 55 1410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00105 K16250 NRPD1; DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] - csv:101214578 1922.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00434 Bma-Chr3:3310264 Bma12g00105 Bma-Chr12:1687320 4.95E-09 dispersed
Bma06g00170 Bma-Chr6:2170744 Bma12g00105 Bma-Chr12:1687320 1.60E-10 dispersed
Bma12g00105 Bma-Chr12:1687320 Bma14g00477 Bma-Chr14:5383799 1.33E-45 dispersed
Bma12g00105 Bma-Chr12:1687320 Bma04g00164 Bma-Chr4:1414417 1.12E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g409 . . Bda06g00069 . . Bpe07g00129 . . Cmo06g00731 . . . . . . . . . . . . . . . Cla10g00343 Cam10g0357 Cec10g0371 Cco10g0365 Clacu10g0358 Cmu10g1195 Cre10g0608 . . Cone6ag0744 Cone9ag0748 Lsi07g01394 . . Cme06g02680 . . . . . . . Bma12g00105 . . . . . Car06g00635 . Cpe08g00802 . . . . . . . . . . . . . . . . Csa03g00363 Chy06g01960 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005483 2 9 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00105 Bma_Chr12 FPKM 3.413742 3.092383 1.722293 1.815729 2.457571 2.371413 2.923506 2.323934 2.601494 3.072178