Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00109 ATGTTGAATCCAAAGTTTTTTGAAACATTGTCATTTGGTGGATCGCAACATGGTCAGGGTCAACAAGTTGTGCCTTTTCCTACTAACAAGGGATCCTTGAAGGTTTTGCTCTTACATGGAGTATTAGACATTTGGATCAATGAGGCCAAAAACCTTCCTAATATGGATATGTTTCATAAGACTTTAGGAGATGTGTTTTCAAAAATACCTTTGAAAGTTGGCAGCAAAATTGAAGGGCGTGTATCTACTGCGATAACCAGTGATCCCTATGTGACTGTTTCTGTTTCTGGTGCTGTAATTGGAAGAACTTTTGTTATTCCTAACTGTGAAGACCCTGTTTGGAGGCAGCATTTTAACGTTCCTGTCGCACATTATGGACCAGAAGTGCAATTTGTAGTCAAAGACAATGATGTTGTGGGATCTCAGATCATAGGCGCTGTTGGTATTCCTGTGGAACAATTATACTCTGAGGTGAAAGTAGAAGGTATCTTTCCGATCCTTAATTCAGGAGGGAAGCCCTGCAAAGCTGGAGCTGTCTTGAGTTTATCGATTCAGTATATACCTATTAACAAGATAAACCTCTATGATGGTAGATTAGATTCATCTAATGATAGCCATGTTGTCTCTGCAACTTATTTTCCTCCTAGGAAAGGAGGCAAAGTTAAACTATATCAAGACGCTCACGTCCATAATGATCTCCTTCCAAATATCAAGCTTTATGGTGGTGATAAGTACAATCATGGATCTTGTTGGCATGACGTCTTCAATGCCATAAATCAAGCACGTCGTTTGATCTACATTACTGGTTGGTCTGTTTATCATGATGTTGGACTTGTTCGGGATGCTAATAATCCCGAGGATTATATTTTGGGAAATCTTCTCAAAACCAAGTCACAAGAAGGTGTGAGAGTGTTGCTGCTTATATGGGATGATCCAACTTCTAAAAGCATTTTGGGATATAAAACGGATGGACTCATGGGAACAAACGATGAGGAAACTCGCCGTTTTTTTAAGCATTCTTCTGTCAAAGTGATTCTCTGTCCAAGGTCTGCCGGAAGTGGTCATAGCTGGGCTAAACAACAGGTAGATAGAATAGAGGACTATATAAATTTTTCTAAGGTCTTGCTCACATTGCCATTAATGTATTATTACATAGCCTATTTTGGATGCATTTATCAGGAAGTTGGAACAATTTATACCCATCATCAGAAGACTGTGATTGTGGATGCTGATGCAGGTAATTATAGAAGAAAGATCATAGCATTTGTTGGAGGTCTTGATCTATGCAAGGGCCGATACGATACCCCTCAGCATCCTATTTTCAGGACACTAAATACTGTCCACAGAGATGACTTCCACAACCCAAATTTCGCGTACATTTTCTTGAAGTCTTGTATGGAAATCGCAATCCACATACAAAATGGAACAAAACTACTTTTCTTATATTTTGATAGTTCAAATTATGAACTAATTCCTGGTGGTCCACGAGAGCCATGGCATGATTTGCATTGTCAAATTGATGGTCCAGCTGCATATGATGTCCTCACCAATTTTGAGGAGCGTTGGAGGAAGGCTTCTGAAGCTCGTGGACTGAAGAAACTAAAATCATCAAATGATGATGCGTTACTCAAGATTGAACGAATTTCTGAAATCATTGGAGTAGAAGATGCATCTCGTCTAGGTATTGTTGATCCAGAAGGTTGGAATGTGCAGATTTTCCGTTCAATTGATTCTAACTCCGTGATAGGCTTTCCAGATGAACCAAAGCTCGCAACAGGGAAGAACTTAGTATGTGGAAAGAATGTGCTCATAGACATGAGTATTCATACAGCATATATCAGTGCAATACGAGCAGCACAACATTTTATTTACATCGAGAATCAGTATTTCCTCGGTTCTTCATATAATTGGAATTCTCACAAAGATTTAGGGGCAAACAATTTAATACCCATGGAAATCGCTCTTAAAATTGTGAACAAAATCAAAGCAAAAGAGAGGTTTTCTGCTTATATTGTTGTTCCTATGTGGCCAGAAGGCAATCCCACCAGCACACCTATCCAAAGAATTCTCTATTGGCAGAGAAAAACCATGCAGATGATGTATGAAATGATATATAACGCTTTAAAGGAGGTTGGACTTGAGAATACATATGAGCCCCAAGATTATTTGAATTTCTTTTGCCTCGGAAATCGAGAAGCATCAGATGGAGAGAACACTGTTAAAGCTGGGAAATCTGGTGGCACAAAAACTCCTCAAGCACTAGCTCAGAGAGCTCGTCGCTTTATGATCTATGTCCACTCGAAAGGGATGATAGTGGACGACGAGTATGTAATTCTGGGATCTGCCAATATTAATCAACGATCTATGGAAGGCACTAGAGACACAGAAATTGCTATGGGTGCATACCAGCCTCTTCATACCAGGTCAAGCGGATTCTCTCGCCCACATGGTCAGCAGATATATGGGTATAGAATGTCATTATGGGCAGAGCACATGGGGACTTTGGAGCAATGTTTCGAGCAACCCGACAGTGTCGAATGTACAAGACGGGTTAGATCTTTGAGCGAGAAAAATTGGAGCCAATATGTAGGGGAGGAGCTGGTGGAAATGAGAGGCCATCTTCTCAAGTATCCACTCGATGTTGATCGGACTGGCAAGGTTAAGAATCTTCCGGGCTTCGAAACGTTCCCGGACGTAGGAGGTAACATAATGGGAACATTCATTGCCATACAAGAAAATCTCACCATCTAA 2751 40.42 MLNPKFFETLSFGGSQHGQGQQVVPFPTNKGSLKVLLLHGVLDIWINEAKNLPNMDMFHKTLGDVFSKIPLKVGSKIEGRVSTAITSDPYVTVSVSGAVIGRTFVIPNCEDPVWRQHFNVPVAHYGPEVQFVVKDNDVVGSQIIGAVGIPVEQLYSEVKVEGIFPILNSGGKPCKAGAVLSLSIQYIPINKINLYDGRLDSSNDSHVVSATYFPPRKGGKVKLYQDAHVHNDLLPNIKLYGGDKYNHGSCWHDVFNAINQARRLIYITGWSVYHDVGLVRDANNPEDYILGNLLKTKSQEGVRVLLLIWDDPTSKSILGYKTDGLMGTNDEETRRFFKHSSVKVILCPRSAGSGHSWAKQQVDRIEDYINFSKVLLTLPLMYYYIAYFGCIYQEVGTIYTHHQKTVIVDADAGNYRRKIIAFVGGLDLCKGRYDTPQHPIFRTLNTVHRDDFHNPNFAYIFLKSCMEIAIHIQNGTKLLFLYFDSSNYELIPGGPREPWHDLHCQIDGPAAYDVLTNFEERWRKASEARGLKKLKSSNDDALLKIERISEIIGVEDASRLGIVDPEGWNVQIFRSIDSNSVIGFPDEPKLATGKNLVCGKNVLIDMSIHTAYISAIRAAQHFIYIENQYFLGSSYNWNSHKDLGANNLIPMEIALKIVNKIKAKERFSAYIVVPMWPEGNPTSTPIQRILYWQRKTMQMMYEMIYNALKEVGLENTYEPQDYLNFFCLGNREASDGENTVKAGKSGGTKTPQALAQRARRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPLHTRSSGFSRPHGQQIYGYRMSLWAEHMGTLEQCFEQPDSVECTRRVRSLSEKNWSQYVGEELVEMRGHLLKYPLDVDRTGKVKNLPGFETFPDVGGNIMGTFIAIQENLTI 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1720156 1725923 - Bma006981.2 Bma12g00109 91535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00109 916 SUPERFAMILY Phospholipase D/nuclease 207 526 - -
Bma12g00109 916 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 7 361 - -
Bma12g00109 916 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 33 189 IPR035892 -
Bma12g00109 916 SUPERFAMILY Phospholipase D/nuclease 608 847 - -
Bma12g00109 916 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 761 788 IPR001736 GO:0003824
Bma12g00109 916 Pfam Phospholipase D Active site motif 398 432 IPR001736 GO:0003824
Bma12g00109 916 Pfam Phospholipase D Active site motif 762 788 IPR001736 GO:0003824
Bma12g00109 916 Gene3D C2 domain 35 175 IPR035892 -
Bma12g00109 916 Pfam Phospholipase D C terminal 836 906 IPR024632 -
Bma12g00109 916 SMART pld_4 397 432 IPR001736 GO:0003824
Bma12g00109 916 SMART pld_4 761 788 IPR001736 GO:0003824
Bma12g00109 916 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 393 460 - -
Bma12g00109 916 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 487 916 - -
Bma12g00109 916 CDD C2_plant_PLD 34 187 - -
Bma12g00109 916 Gene3D Endonuclease Chain A 575 807 - -
Bma12g00109 916 Gene3D Endonuclease Chain A 240 546 - -
Bma12g00109 916 SMART C2_3c 41 163 IPR000008 -
Bma12g00109 916 Pfam C2 domain 40 166 IPR000008 -
Bma12g00109 916 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 397 432 IPR001736 GO:0003824
Bma12g00109 916 PANTHER PHOSPHOLIPASE D 393 460 IPR015679 -
Bma12g00109 916 PANTHER PHOSPHOLIPASE D 7 361 IPR015679 -
Bma12g00109 916 PANTHER PHOSPHOLIPASE D 487 916 IPR015679 -
Bma12g00109 916 PIRSF PLD_plant 481 916 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bma12g00109 916 PIRSF PLD_plant 27 466 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bma12g00109 916 ProSiteProfiles C2 domain profile. 18 164 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01121 Bma-Chr5:50033692 Bma12g00109 Bma-Chr12:1720156 0 dispersed
Bma10g00806 Bma-Chr10:13224797 Bma12g00109 Bma-Chr12:1720156 0 dispersed
Bma12g00109 Bma-Chr12:1720156 Bma15g00335 Bma-Chr15:3307069 6.58E-157 dispersed
Bma12g00109 Bma-Chr12:1720156 Bma09g00903 Bma-Chr9:48415787 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00109 K01115 - twl:119980407 1297.72