Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00112 TGGAGCAAAGCCTTGGCAATGGGGAGGTTGAACTTCTTCATTTTGCTTGTTTTGGTCATCACCGGAAAATCAATACTTGGGGGAGCCGTCTTTCAACCGAGCCGTTGGATACCGGCTCACGCCACCTTTTACGGGGATGAAACGGCCTCTGAGACAATGGGAGGGGCGTGCGGGTACGGAAACTTGTTCGTGAATGGGTATGGAACAGACACGGCTGCATTGAGCTCGACGTTGTTCAATAACGGATATGCATGTGGGACGTGTTACCAAATAAAATGTTTTCAAGCAAATGCATGCTACACCAACTTAGCATACACCACCGTCACGGCCACCAACCTTTGCCCTCCAAATTGGTCTCAAGACTCCAACGCAGGCGGATGGTGCAACCCTCCCAGAGTTCACTTTGACATGTCCAAGCCCGCCTTCATGAAAATCGCTGATTGGAAAGCCGGCATAGTCCCGATCCTCTACCGAAGGGTACCATGTGCGAGGAAAGGGGGTGTGAGATTCAACTTTCAGGGGAACGGATATTGGCTTCTCGTGTACGTGATGAACGTCGGAGGAGGGGGAGATTTGGTGACAATGCAAGTGAAAGGAAGCAAGACAGGCTGGATAACCATGAGCCACAATTGGGGAGCTTCGTACCAAGCATTTGCCACATTGGGTGGTCAATCTCTGTCTTTTAGGCTCACTTCCTACACTTCCAAAGAGACTCTTTATGCTTGGAATGTTGCTCCTTCTAATTGGCAAGTAGGGTTGACCTACCAATCTAATCTTAATTTCCACTGA 789 49.43 WSKALAMGRLNFFILLVLVITGKSILGGAVFQPSRWIPAHATFYGDETASETMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCFQANACYTNLAYTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMSKPAFMKIADWKAGIVPILYRRVPCARKGGVRFNFQGNGYWLLVYVMNVGGGGDLVTMQVKGSKTGWITMSHNWGASYQAFATLGGQSLSFRLTSYTSKETLYAWNVAPSNWQVGLTYQSNLNFH 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1746745 1747838 + Bma006985.1 Bma12g00112 91538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00112 262 Gene3D - 167 262 IPR036749 -
Bma12g00112 262 PANTHER EXPANSIN-A15 13 262 IPR002963 GO:0009664
Bma12g00112 262 PANTHER EXPANSIN-A7 13 262 - -
Bma12g00112 262 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
Bma12g00112 262 Gene3D - 25 163 IPR036908 -
Bma12g00112 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
Bma12g00112 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Bma12g00112 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Bma12g00112 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Bma12g00112 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Bma12g00112 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Bma12g00112 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Bma12g00112 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Bma12g00112 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Bma12g00112 262 Pfam Expansin C-terminal domain 168 246 IPR007117 -
Bma12g00112 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Bma12g00112 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Bma12g00112 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Bma12g00112 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Bma12g00112 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Bma12g00112 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Bma12g00112 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Bma12g00112 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Bma12g00112 262 SMART dpbb_1 71 157 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00112 Bma-Chr12:1746745 Bma12g00124 Bma-Chr12:1846061 0 dispersed
Bma12g00112 Bma-Chr12:1746745 Bma08g01001 Bma-Chr8:49073113 4.19E-89 transposed
Bma12g00112 Bma-Chr12:1746745 Bma08g01113 Bma-Chr8:50094989 3.15E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00112 - - csv:101221231 444.121