Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00115 ATGGACGAGGAAATGGAGGTTGAGGTTGATGTTGGAGTTGAACAGGTTTTGTTTGAGGCGTATGAAATGGACATTGGATACGAGTTTGATGCGGCTATGTATTTTGACTTTAATCGAGCTGAGAGTCCGGCGGAGGCTCGTCTGGCTGATATTTGGTTTCAATCTGCTAAAAGTTATCCTCCTTCCCCTTTTGTGGCGAACTTATTCATTAGAGGGTCGACCCTTTTGGAAACCATGGATTCCTCTCAAGAGTTACCCAAGCAGGCTGAGTTGCGCAGAGGAGAAAAAATTATGAGTATGGGTTCGGTAATGTCAGTGGCTGAAGCAAATAATAAAGGATGTGAAAGGGCTGGGAATTTCTCTTATTTACGGGATGATAATGAGCAGAAATGTATCTATCAAAGCCACAAATCAAGTTCAGTTAGAAGCAATACTGCTTGTAAGACTTTCGTACCGAGGAGCTCAACTTTCATGAAACCAACTGCAAGTCAATTGGCCAAACAATCTCAACTCGGTAGTTCCAGATTTCAAAATTTACCCTGGAAAAATGATGTGAACAATTTCTGTAATTATTCTGGGGGTGAAAGCCATGCTTCCAAGAAACAAAAGCTAGATGGAGGTTACTTCCGCAAGGTCATGGAAGAGCAGCAGGCTAATTTTTTCCGAAAGATTACGAGAAAGGATGTACCTGTGGATAAAAATGCTTCAGTTTCCAAGCTGAAACTTACAATTCCCAGAGAGCCTGACCTTGAAACAATGCATAGGGCTCAGAGGATGAGGTCGAAGAATATCGGTACACAATTAGTGCAGGAGACAGTGGGAACGCACAGATTTAAAGCTCGTCCACTGAACAGAAAAATTTTAGAGGCTCCTTCATTTACTCTCAACAAGAAAAGTACTCCAAAATTGCCCGAGTTTCGTGAATTTCGCTTGAAGACATTAGAGAGGGCAACACAAAATACACCTTCCGTTTTGTCAATCTCATCACAATGCAGTGATTTTGATAAGGCATCAGATAAACATAGTACTTTTCATGTTTCAAGCAAGGATACTCCAAAGCAGGATGGACCTGCTGTGATGCATGAATTTAAGGCTCGTCCTCTTAATAGGAAGATATTCTTAAGTAAAGGCGATATCGGTATCTTCAGAACTGCAAAACGCCTAGCCACTGTACCAATGGAATTGAATTTGCATACCCAGAAGAGGATTCTGCAACCCCCTACTGACCTTTTCAGTAAGCTTTCCTTGAAATCAGAACTCCCACCTACTAATGGATCTAAGATGAAATTACCTCCTGCTTCCATATTCAAAAAGGGCTCAAAAGAAAATAGATCCATATATATGCAACCCAAACATAAGATGATACATGTAGTTAAAGAGAAAACTCCCCTCATCGAAAACAGATTAAATTCGGAATGA 1419 40.87 MDEEMEVEVDVGVEQVLFEAYEMDIGYEFDAAMYFDFNRAESPAEARLADIWFQSAKSYPPSPFVANLFIRGSTLLETMDSSQELPKQAELRRGEKIMSMGSVMSVAEANNKGCERAGNFSYLRDDNEQKCIYQSHKSSSVRSNTACKTFVPRSSTFMKPTASQLAKQSQLGSSRFQNLPWKNDVNNFCNYSGGESHASKKQKLDGGYFRKVMEEQQANFFRKITRKDVPVDKNASVSKLKLTIPREPDLETMHRAQRMRSKNIGTQLVQETVGTHRFKARPLNRKILEAPSFTLNKKSTPKLPEFREFRLKTLERATQNTPSVLSISSQCSDFDKASDKHSTFHVSSKDTPKQDGPAVMHEFKARPLNRKIFLSKGDIGIFRTAKRLATVPMELNLHTQKRILQPPTDLFSKLSLKSELPPTNGSKMKLPPASIFKKGSKENRSIYMQPKHKMIHVVKEKTPLIENRLNSE 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1764413 1768313 - Bma006989.1 Bma12g00115 91541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00115 472 Coils Coil 469 472 - -
Bma12g00115 472 Pfam Cell cycle regulated microtubule associated protein 240 396 IPR027330 -
Bma12g00115 472 PANTHER TARGETING PROTEIN FOR XKLP2 10 441 IPR009675 GO:0005819|GO:0005874|GO:0032147|GO:0060236
Bma12g00115 472 PANTHER OS06G0130200 PROTEIN 10 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00115 - - - qsu:112029561 413.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00791 Bma12g00115 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00566 Bma-Chr8:33836517 Bma12g00115 Bma-Chr12:1764413 2.93E-17 dispersed
Bma12g00115 Bma-Chr12:1764413 Bma12g01146 Bma-Chr12:43922148 1.82E-59 dispersed
Bma12g00115 Bma-Chr12:1764413 Bma05g00791 Bma-Chr5:44916735 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g451 Blo02g01073 . . . . . . . . Cmo16g01075 . . . . . Cpe14g00849 . . . . . . . . Cla10g00314 Cam10g0329 Cec10g0342 Cco10g0334 Clacu10g0325 Cmu10g1165 Cre10g0575 . . . . Lsi07g01363 . . Cme06g02648 . . . . . . Bma05g00791 Bma12g00115 . . . . Cma16g01029 . Car16g00980 . . . . . . . . . . . . . . . . . Csa03g00337 Chy06g01988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007341 0 3 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00115 Bma_Chr12 FPKM 12.336478 14.201593 13.345698 14.928156 11.08637 12.964003 12.288244 22.163843 23.177181 22.60364