Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00119 ATGGCCACTTCCGGTGGTGTTAGTTGTAGAAATGGCAGTTCACGGAACTCTCTCAGGGTGGATAAGACTCTGTCTGTTAACTCGAACGCTAAGCCTGCCCTCAAAACGAAGAATTTTTCTAATTCCGGGAGTCGTCGCAGCTGTCCGGCCTCTCTTGGCGGTGCCAATGGAGCTGCAAAGGATGACGATGGAGTGACGGGAAGAGTTCGAGTAGCTGTCCGATTGCGACCTCGAAATGCAGAAGAAATTGCAGCAGATGCTGATTTTGCAGATTGTGTTGAATTGCAACCAGAGCTTAAAAGGTTGAAACTTCGGAAGAACAACTGGGACTCGGACACTTATGAATTTGATGGAGTGCTAACTGAATTTGCATCACAAAAACGCGTCTATGAAGTCGTGGCAAAGCCGGTTGTGGAGAGTGTGCTGGATGGGTATAACGGGACAGTAATGGCATACGGACAGACTGGTACTGGTAAAACGTATACTCTTGGCAGGATAGGAGAATCAGATATGGCTGATCGAGGAATTATGGTCCGGGCTATGGAAGACATTTTGGCAGATGTTTCCTTTGAAACAGATTCTGTCGCAGTTTCCTATTTGCAGCTTTATATGGAGACAATACAGGACCTTCTAAATCCTGCAAATGATAATATTTCGTTTTCAGAAGACCCAAAAACTGGAGATGTTTCGATTCCTGGTGCTTCCCTTGTTGAAATAACGGATCAACAGACCTTTTTGGATCTCCTTAGATTAGGAGAAGTTCGCCGCTTTGCTGCAAATACAAAATTAAATACTGAATCTTCACGCAGTCATGCGATTTTGATGATCTATGTAAAACGTTTGGTCAAGGATAGTGATCAGATTCATTCAGGCGAAAGTTATGAAGGGTCCCGTCAGTTTAAATCTTTCAAACCTCCAATTGTTCGAAAGGCAAAGTTTGTAGTGGTTGATCTTGCTGGTTCAGAACGCATCGATAAATCAGGAAGTGAGGGGCATGCACTTGAGGAAGCCAAATCTATAAATCTTTCTTTAAGTGCATTGGGGAAGTGCATAAATGCTCTAGCTGAGAATAGTGCACATATTCCTGTTCGGGATTCAAAGCTGACAAGATTGCTTCGAGATTCCTTTGGGGGCACAGCAAGGACTTCCCTGGTTATTACGATTGGTCCATCACCTCGTCATCGGGGAGAAACAGCAAGTACAATTATGTTTGGGCAGCGAGCGATGAAGGTTGAAAATATGTTAAAAATAAAGGAGGAATTTGATTATAAAAGTCTATCAAGAAGGCTAGACATACAATTGGACAAACTCATCGCTGAACAAGAAAGGCAGAGGAAAGCTTTTGAGGATGAAATTGAAAGAAAAACCATGGCAGCTCAAAATCAGATTTTGGAGGCAGAAAGAAACTATGCAAACGCACTAGAGAAGGAGAGAGTGAAGTATCAGAATGACTATATGGAATCAATAAGGAAGCTTGAAGAAAAATTGATGATGAATCAGCGAAAGCACGAGAATGAAAACATGAAGAATGGGTTCAAAGATGAAAACTCTTACATGAATCCTAACGTGTCTGCCGTTGAGGGACTAGCCAAGCTAAAAGAGTTGCTTCAGAAAGAAAATCTACTACGAAATGCAGCCGAAAAGGAAATTAGCGACCTTAAAAGTCAATTAGAACAACTGAAAAGGTCTGAGGCTTCCGGAAATTTAGAGATCTTAAAGCTTCGCAAGATGCTGGAACACGAGACAAATTCGAACGAGAAACTCGAAGGGGAAATAACGGTGCTTCGTAGTCAGTTGTTGAACTTGAGTTTGAAAGCTGATGAGACGAGAAGGCGAATCAATAGTGGAGAGCCGGGGAAAGTGCTTGGAGCTCTAGATGCTTTGATGTCTCAAGCTAGGCATACACTCGAGAAAGATTCTGGAACTGGTGATAGAAATTCAATGGAAAAACTCTTTGAACAAGTGGGACTACAGAAAATCCTTTCATTGTTGGAAGCCGAAGATTCTGACGTGGGAGTCCATGCTGTGAAAGTAGTTGCAAATCTAGCTGCCGAAGAAACAAATCAGCAGAAGATTGTTGAAGCCGGTGGTCTCACGTCGTTGTTAAGACTTCTTAAAATCTCGAAGGATGAGAATATTCATAGAGTAGCTGCCGGTGCTATTGCGAATCTGGCCATGAATGAAACTAACCAGGATCTGATAATGGCTCAAGGCGGCATTGGCTTGTTGTCCGTGACGGCTGCTAATGCCGAAGATCCCCAAACCCTTCGAATGGTTGCCGGAGCGATTGCCAATCTTTGTGGAAATGGTAAATTACAGACAAAGCTGAGCAGCGAAGGTGGCATCAAGGCATTGCTCGGAATGGTTAGTTGCAGACATCTCGAGGTTCTCGCTCAAGTTGCTCGTGGAATTGCGAATTTTGCTAAGTGCGAGTCAAAAGCACCTACAAAAGCGAGTAAGATGAGGAAGTCTCTCTTGATTGAGGATGGAGGACTTGCCTGGATTATTCAGAATGCCAATAGCGAAGCCTCGCCAATTCGACGCCATATCGAACTTGCTCTATGCCATTTGGCGCAAAACGAAATGAATGCGAAAGACATGATCGGCGGAGGCGCAGCGTGGGAGCTTGTTCGTATAGCTCGAGAATGTTCCCGGGAAGACATAAGAACTCTCGCCCTTCAAGCACTGACTTCTAGCCCTGCTTTCAAAGCCGAAGCAAGGAGACTAATGATCGATTATTATTGA 2745 43.83 MATSGGVSCRNGSSRNSLRVDKTLSVNSNAKPALKTKNFSNSGSRRSCPASLGGANGAAKDDDGVTGRVRVAVRLRPRNAEEIAADADFADCVELQPELKRLKLRKNNWDSDTYEFDGVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTYTLGRIGESDMADRGIMVRAMEDILADVSFETDSVAVSYLQLYMETIQDLLNPANDNISFSEDPKTGDVSIPGASLVEITDQQTFLDLLRLGEVRRFAANTKLNTESSRSHAILMIYVKRLVKDSDQIHSGESYEGSRQFKSFKPPIVRKAKFVVVDLAGSERIDKSGSEGHALEEAKSINLSLSALGKCINALAENSAHIPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETASTIMFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEQERQRKAFEDEIERKTMAAQNQILEAERNYANALEKERVKYQNDYMESIRKLEEKLMMNQRKHENENMKNGFKDENSYMNPNVSAVEGLAKLKELLQKENLLRNAAEKEISDLKSQLEQLKRSEASGNLEILKLRKMLEHETNSNEKLEGEITVLRSQLLNLSLKADETRRRINSGEPGKVLGALDALMSQARHTLEKDSGTGDRNSMEKLFEQVGLQKILSLLEAEDSDVGVHAVKVVANLAAEETNQQKIVEAGGLTSLLRLLKISKDENIHRVAAGAIANLAMNETNQDLIMAQGGIGLLSVTAANAEDPQTLRMVAGAIANLCGNGKLQTKLSSEGGIKALLGMVSCRHLEVLAQVARGIANFAKCESKAPTKASKMRKSLLIEDGGLAWIIQNANSEASPIRRHIELALCHLAQNEMNAKDMIGGGAAWELVRIARECSREDIRTLALQALTSSPAFKAEARRLMIDYY 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1796994 1803807 + Bma006993.1 Bma12g00119 91545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00119 914 MobiDBLite consensus disorder prediction 29 63 - -
Bma12g00119 914 Coils Coil 438 509 - -
Bma12g00119 914 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 696 739 IPR000225 GO:0005515
Bma12g00119 914 PANTHER KINESIN-LIKE PROTEIN KIN-UA 50 905 IPR033291 GO:0008017|GO:0032886|GO:0048364
Bma12g00119 914 Pfam Armadillo/beta-catenin-like repeat 688 725 IPR000225 GO:0005515
Bma12g00119 914 Coils Coil 571 605 - -
Bma12g00119 914 Gene3D Kinesin motor domain 59 448 IPR036961 -
Bma12g00119 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 445 IPR027417 -
Bma12g00119 914 Pfam Kinesin motor domain 74 411 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00119 914 SUPERFAMILY ARM repeat 613 897 IPR016024 -
Bma12g00119 914 PANTHER KINESIN-RELATED 50 905 IPR027640 GO:0003777|GO:0007018
Bma12g00119 914 ProSitePatterns Kinesin motor domain signature. 311 322 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bma12g00119 914 Gene3D - 595 910 IPR011989 -
Bma12g00119 914 PRINTS Kinesin heavy chain signature 361 382 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00119 914 PRINTS Kinesin heavy chain signature 144 165 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00119 914 PRINTS Kinesin heavy chain signature 261 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00119 914 MobiDBLite consensus disorder prediction 29 49 - -
Bma12g00119 914 CDD KISc 68 409 - -
Bma12g00119 914 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 655 697 IPR000225 GO:0005515
Bma12g00119 914 SMART kinesin_4 66 419 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00119 914 Coils Coil 529 563 - -
Bma12g00119 914 ProSiteProfiles Kinesin motor domain profile. 68 411 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma12g00119 914 SMART arm_5 645 684 IPR000225 GO:0005515
Bma12g00119 914 SMART arm_5 685 726 IPR000225 GO:0005515
Bma12g00119 914 SMART arm_5 727 768 IPR000225 GO:0005515
Bma12g00119 914 SMART arm_5 769 809 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00119 - - K10396 qsu:112016186 1316.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01621 Bma-Chr7:51760109 Bma12g00119 Bma-Chr12:1796994 9.42E-10 dispersed
Bma08g01159 Bma-Chr8:50600221 Bma12g00119 Bma-Chr12:1796994 0 dispersed
Bma12g00119 Bma-Chr12:1796994 Bma07g01518 Bma-Chr7:50790428 2.54E-55 dispersed
Bma12g00119 Bma-Chr12:1796994 Bma12g00128 Bma-Chr12:1880330 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g461 . . . . . Bpe07g00141 . . Cmo06g01154 . . . . . . . Cpe05g00275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00119 . . . Cma06g01129 . Car06g00965 . Cpe08g00491 . Bhi12g00356 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00119 Bma_Chr12 FPKM 3.24263 5.349807 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0