Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00124 ATGGGGAGGTTGAACTTCTTCTTCATCTTGCTTATTTTGGCCATCACCGGAAAATCAATACTTGTGGGAGCCGTCTTTCAACCTAGCCGTTGGATACCGGCTCACGCCACCTTTTACGGGGATGAAACGGCCTCTGAGACAATGGGAGGGGCGTGCGGGTACGGAAACTTGTTCGTGAATGGGTATGGAACAGACACGGCTGCATTGAGCTCAACGTTGTTCAATAACGGATATGCATGTGGGACGTGTTACCAAATAAAATGTTTTCAAGCAAAGGCATGCTACACCAACTTAGCATACACCACCGTCACGGCCACCAACCTTTGCCCTCCAAATTGGTCTCAAGACTCCAACGCAGGCGGATGGTGCAACCCTCCCAGAGTTCACTTTGACATGTCCAAGCCCGCCTTCATGAAAATCGCTGATTGGAAAGCCGGCATAGTCCCGATCCTCTACCGAAGGGTACCATGTGCGAGGAAAGGGGGTGTGAGATTCAACTTTCAGGGGAACGGATATTGGCTTCTCGTGTACGTGATGAACGTCGGAGGAGGGGGAGATTTGGTGACAATGCAAGTGAAAGGAAGCAAGACAGGGTGGATAACCATGAGCCACAATTGGGGAGCTTCGTACCAAGCATTTGCCACATTGGGTGGTCAATCTCTATCTTTTAGGCTCACTTCCTACACTTCCAAAGAGACTCTTTATGCTTGGAATGTTGCTCCTTCTAATTGGCAAGTAGGGTTGACCTACCAATCTAATCTTAATTTCCACTGA 774 48.97 MGRLNFFFILLILAITGKSILVGAVFQPSRWIPAHATFYGDETASETMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCFQAKACYTNLAYTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMSKPAFMKIADWKAGIVPILYRRVPCARKGGVRFNFQGNGYWLLVYVMNVGGGGDLVTMQVKGSKTGWITMSHNWGASYQAFATLGGQSLSFRLTSYTSKETLYAWNVAPSNWQVGLTYQSNLNFH 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1846061 1847139 - Bma006999.1 Bma12g00124 91550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00124 257 SMART dpbb_1 66 152 IPR007112 -
Bma12g00124 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Bma12g00124 257 Pfam Lytic transglycolase 66 152 IPR009009 -
Bma12g00124 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 162 IPR007112 -
Bma12g00124 257 PANTHER EXPANSIN-A15 7 257 IPR002963 GO:0009664
Bma12g00124 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Bma12g00124 257 Gene3D - 19 158 IPR036908 -
Bma12g00124 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Bma12g00124 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Bma12g00124 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Bma12g00124 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Bma12g00124 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Bma12g00124 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Bma12g00124 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Bma12g00124 257 Gene3D - 162 257 IPR036749 -
Bma12g00124 257 PANTHER EXPANSIN-A7 7 257 - -
Bma12g00124 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Bma12g00124 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Bma12g00124 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Bma12g00124 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Bma12g00124 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Bma12g00124 257 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Bma12g00124 257 SUPERFAMILY Barwin-like endoglucanases 30 180 IPR036908 -
Bma12g00124 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00575 Bma-Chr8:34100714 Bma12g00124 Bma-Chr12:1846061 1.29E-35 dispersed
Bma12g00112 Bma-Chr12:1746745 Bma12g00124 Bma-Chr12:1846061 0 dispersed
Bma12g00124 Bma-Chr12:1846061 Bma08g01001 Bma-Chr8:49073113 2.28E-90 dispersed
Bma12g00124 Bma-Chr12:1846061 Bma08g01113 Bma-Chr8:50094989 8.91E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00124 - - csv:101221231 447.203